Basic Information
Locus ID:
Ag8G00899
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
dehydration-induced
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 80977241 | 80981321 | + | Ag8G00899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 26,476.21 Da | 58.32 | 70.43 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05605 | Drought induced 19 protein (Di19), zinc-binding | 49 | 101 | 3.7E-13 | IPR008598 |
| Pfam | PF14571 | Stress-induced protein Di19, C-terminal | 125 | 230 | 6.2E-22 | IPR027935 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 215 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017220999.1 | PREDICTED: protein DEHYDRATION-INDUCED 19-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q688X9 | Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4D6L7K8 | Protein dehydration-induced 19 OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g4758 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 32.967796 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.432913 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.496613 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.091734 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.729062 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.235113 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.973462 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.234825 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.849174 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.505947 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.379614 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.513052 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.680054 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.800359 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.479988 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.706845 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.376289 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.04288 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.607838 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.87815 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.003502 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.565459 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.619663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.317622 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.761002 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.30195 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.077124 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.535781 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.424115 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.736458 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.208945 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.30011 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.080458 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.710788 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.318711 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.797429 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.922396 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.057348 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.661295 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.936967 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.014232 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.421133 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.01545 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.481422 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.277366 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.006935 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.576591 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.17213 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.978343 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.348626 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20262, jg22075 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22219 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018087 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g182620 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41331, Sbi_jg48798 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28037 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017081 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl45985, Sgl45986, Sgl50681, Sgl50682 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012350, gene:ENSEOMG00000032852 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005710, CQ.Regalona.r1.8BG0005940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30073060 |
| Apiaceae | Apium graveolens | 2 | Ag7G00779, Ag8G00899 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G004300, COCNU_03G011100, scaffold011959G000040 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702473, gene-LOC103713198, gene-LOC103721235 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.706.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G13461 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2184 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2469 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5489, nbisL1-mrna-7609 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.911 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038301 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.2702, AH05.1411, AH07.1496, BH02.2785, BH05.1579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0028170, gene-QOZ80_1BG0078360 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0087360.2, HORVU.MOREX.r3.3HG0279260.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015505, gene-QYE76_054514 |
| Poaceae | Oryza coarctata | 6 | Oco01G016920, Oco02G017130, Oco03G008460, Oco04G008880 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g48190.1, LOC_Os02g20170.1, LOC_Os05g48800.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G226500, gene-BS78_09G234100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0506061, Pt_Chr0605128, Pt_Chr0605139, Pt_Chr0605691 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G015560, Chr02G013060, Chr03G013160, Chr05G020640 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G646700, Tel3E01G415700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG058040, gene_TRIDC1BG066950 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G395200.1, TraesCS1B02G423500.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb157160_P006, Zm00001eb240660_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13673, nbis-gene-26049, nbis-gene-34050 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10849, Zma_g15290, Zma_g27372, Zma_g28793, Zma_g8406 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.354, evm.TU.LG04.401 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.251 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29443 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6067 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20927 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.155 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015934 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-5942, nbisL1-mrna-5943 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16872 |
| Salicaceae | Populus euphratica | 3 | populus_peu10028, populus_peu18134, populus_peu18141 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622307, gene-LOC132631433 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011199 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2451_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1365 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25630.v3.1 |