Basic Information
Locus ID:
Ag8G00897
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 80665254 | 80665978 | + | Ag8G00897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 17,502.19 Da | 65.96 | 98.07 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33855.1 | 0 | |
| RefSeq | XP_017221949.1 | PREDICTED: uncharacterized protein LOC108198683 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YNX5 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028056 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.589657 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.722858 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.513436 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.117846 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.673263 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.245826 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.192778 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.973198 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.040216 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.52899 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.883415 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.964923 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.86166 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.21103 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.382291 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.176047 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.401917 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.377112 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.119912 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.512938 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.419305 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.990092 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.770107 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.03037 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.859539 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.679561 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.331149 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.964371 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.681387 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 16.111567 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.667587 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.836701 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.541805 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.983628 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 42.128803 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.152309 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.825823 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.453545 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.275183 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.478074 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.023397 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.628193 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.450518 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.97218 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.30698 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.179445 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.468394 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.892873 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.369091 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.110738 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20256 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22215 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g182570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41306, Sbi_jg48822 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28055 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017086 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45991, Sgl50687 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032833 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0005760, CQ.Regalona.r1.8AG0005780 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30073100 |
| Apiaceae | Apium graveolens | 1 | Ag8G00897 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G006790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711403 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA16905 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G33855.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g16270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g010240.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03330 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07430 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005653 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4070, BH09.1456, CH09.1566 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313710, gene-QOZ80_4BG0344850 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0175070.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G008460, Oco08G008340 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g39950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G132600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0302324 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G010720, Chr26G009020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G584200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048820, gene_TRIDC2BG051420 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G328700.1.cds1, TraesCS2B02G353600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb079820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36873 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19907 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g05910, gene.Posoc09g05930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.625 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7176 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19021, nbisL1-mrna-20145 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12258 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000005l.23 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008419 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16878 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22054 |
| Salicaceae | Populus euphratica | 1 | populus_peu10023 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623759 |
| Solanaceae | Solanum chilense | 1 | SOLCI000847500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011973 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18008_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2033 |
| Zosteraceae | Zostera marina | 1 | Zosma05g04380.v3.1 |