Basic Information
Locus ID:
Ag8G00887
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
guanylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 78602687 | 78614339 | + | Ag8G00887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 120,641.93 Da | 49.28 | 79.57 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01851 | GBP | 62 | 305 | 1.71365E-61 | - |
| Pfam | PF02841 | Guanylate-binding protein, C-terminal domain | 312 | 615 | 8.7E-42 | IPR003191 |
| Pfam | PF02263 | Guanylate-binding protein, N-terminal domain | 49 | 307 | 4.0E-65 | IPR015894 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 38 | 310 | 4.33E-46 | IPR027417 |
| SUPERFAMILY | SSF48340 | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 312 | 613 | 3.01E-49 | IPR036543 |
| Gene3D | G3DSA:1.20.1000.10 | - | 313 | 489 | 1.7E-15 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 34 | 312 | 1.2E-94 | IPR027417 |
| ProSiteProfiles | PS51715 | GB1/RHD3-type guanine nucleotide-binding (G) domain profile. | 65 | 307 | 70.750778 | IPR030386 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 986 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 828 | - | - |
| Coils | Coil | Coil | 616 | 675 | - | - |
| Coils | Coil | Coil | 691 | 861 | - | - |
| Coils | Coil | Coil | 895 | 936 | - | - |
| Coils | Coil | Coil | 556 | 583 | - | - |
| Coils | Coil | Coil | 866 | 893 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46070.1 | Guanylate-binding family protein. | 0 |
| RefSeq | XP_017222707.1 | PREDICTED: guanylate-binding protein 4-like [Daucus carota subsp. sativus] | 0 |
| Q61107 | Guanylate-binding protein 3 OS=Mus musculus OX=10090 GN=Gbp3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YMG3 | GB1/RHD3-type G domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028041 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 47.211739 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.459574 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.777748 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.158909 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 32.887852 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 42.639805 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.150162 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 46.421841 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 71.255905 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 67.173149 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 70.518875 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 78.315231 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 65.643822 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 60.193848 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.672289 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.47356 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.978046 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.167027 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.888418 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.180325 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.294334 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.78285 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.011936 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.221733 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.873041 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.80138 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.85615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.567568 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.717094 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.491346 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.919699 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.151394 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.009193 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.060808 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.382204 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.260478 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.478197 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.622212 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 32.687305 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.390265 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.553983 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.023956 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.29561 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.466869 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.689926 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.049314 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 33.174187 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.434097 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 43.887951 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 41.974773 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20248, jg22089, jg29101 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_22211, gene_6379, gene_6381, gene_6383 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah009142, Ah029374, Ah029375 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g163380, BVRB_8g182440 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1264, Sbi_jg35311, Sbi_jg41250, Sbi_jg48863 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1342, Seu_jg3447 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017097, GOSA_00028833 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl46009, Sgl50701, Sgl74068, Sgl77542 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000008841, gene:ENSEOMG00000033331 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0012470, CQ.Regalona.r1.7BG0014670 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30073170, pistato.v30122840 |
| Apiaceae | Apium graveolens | 2 | Ag5G01352, Ag8G00887 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G004410, COCNU_03G010980, COCNU_06G006010 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696926, gene-LOC103702467, gene-LOC103707321 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2858.V1.1, AsparagusV1_06.742.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G16206, Ftri18G06803 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g062890.2N, BniB04g015960.2N |
| Casuarinaceae | Casuarina equisetifolia | 8 | Ceq01G2149, Ceq01G2151, Ceq01G2179, Ceq05G1130, Ceq05G1131 ... |
| Casuarinaceae | Casuarina glauca | 6 | Cgl01G2393, Cgl01G2427, Cgl01G2429, Cgl01G2465, Cgl02G2278 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11440 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0004s00020.v1.0, Dusal.0386s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3445, nbisL1-mrna-7600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.896 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005660 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14615 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.1405, AH07.1512, BH05.1574, BH07.1477, CH05.1777 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0110730, gene-QOZ80_2BG0164220 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0087600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015515 |
| Poaceae | Oryza coarctata | 3 | Oco03G008510, Oco04G008930, Oco10G016580 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g20410.1, LOC_Os05g48855.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G234600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505769 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G031770, Chr09G001070, Chr15G023000, Chr18G017020 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G648800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG058260, gene_TRIDC1BG067210 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G396000.1, TraesCS1B02G424400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb235320_P003, Zm00001eb295820_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13667, nbis-gene-24862, nbis-gene-34044 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15286, Zma_g28799 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.366, evm.TU.LG01.95, evm.TU.LG04.388 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21060 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.810, evm.TU.Scaffold_13_RagTag.292 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24042, nbisL1-mrna-30759 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6091 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19948 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.179, evm.TU.utg000027l.148 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006294, Maker00015682 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10605 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21961 |
| Salicaceae | Populus euphratica | 4 | populus_peu10013, populus_peu18119, populus_peu23936 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625173, gene-LOC132631229 |
| Solanaceae | Solanum chilense | 2 | SOLCI000618100, SOLCI004546200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002450, gene-LOC107011422 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6537 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1383 |
| Zosteraceae | Zostera marina | 1 | Zosma06g12590.v3.1 |