Basic Information
Locus ID:
Ag8G00855
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin-like modifier-activating enzyme atg7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 73664204 | 73670183 | + | Ag8G00855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 78,520.73 Da | 48.84 | 89.18 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01486 | Apg7 | 364 | 683 | 2.41519E-168 | - |
| Pfam | PF00899 | ThiF family | 356 | 615 | 1.1E-40 | IPR000594 |
| Pfam | PF16420 | Ubiquitin-like modifier-activating enzyme ATG7 N-terminus | 10 | 330 | 3.2E-97 | IPR032197 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 357 | 677 | 5.62E-43 | IPR035985 |
| Gene3D | G3DSA:3.40.140.70 | - | 15 | 326 | 6.9E-121 | IPR042522 |
| Gene3D | G3DSA:3.40.140.100 | - | 10 | 293 | 6.9E-121 | IPR042523 |
| Gene3D | G3DSA:3.40.50.720 | - | 330 | 706 | 1.3E-134 | - |
| TIGRFAM | TIGR01381 | E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p | 12 | 704 | 1.6E-267 | IPR006285 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45900.1 | ThiF family protein. Component of autophagy conjugation pathway. Required for proper senescence. | 0 |
| RefSeq | XP_017219945.1 | PREDICTED: ubiquitin-like modifier-activating enzyme atg7 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q94CD5 | Ubiquitin-like modifier-activating enzyme atg7 OS=Arabidopsis thaliana OX=3702 GN=ATG7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YLV6 | Ubiquitin-like modifier-activating enzyme ATG7 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028009 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.260536 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.582802 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.281043 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.630148 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.02557 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.711629 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.889039 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.977607 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.46209 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.659466 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.970207 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.248531 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.440773 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.334707 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.540761 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.226391 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.369268 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.896219 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.842558 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.727127 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.955858 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.733854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.787659 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.001364 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.611727 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.878935 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.697716 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.404293 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.549715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.7948 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.363713 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.669949 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.179515 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.897765 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.897757 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.628398 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.38501 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.038985 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.007648 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.39294 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.439901 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.568842 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.034817 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.738031 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.390928 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.673134 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.612858 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.319641 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.687454 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.442066 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20629 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_408, gene_409, gene_411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017109 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40439, Sbi_jg50454 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2028 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026971 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45402, Sgl45405, Sgl50195 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010878, gene:ENSEOMG00000033205 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0006790, CQ.Regalona.r1.8BG0007220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30072400 |
| Apiaceae | Apium graveolens | 2 | Ag8G00855, Ag8G01950 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G001510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2942.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09706 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G45900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000804m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g10820.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g011360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1299 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1341 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01450 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0034s00028.v1.0, Dusal.0034s00029.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-925 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.833 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005604 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2327, BH02.2433, CH02.2610 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024510, gene-QOZ80_1BG0075130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271550.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_053783, gene-QYE76_053784, gene-QYE76_053800 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G014510, Oco02G014830 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G194500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104572, Pt_Chr0104609, Pt_Chr0603327 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G015450, Chr03G011070, Chr05G018360, Chr08G011240 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G532700, Tel3E01G378500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG043750, gene_TRIDC2BG046430 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2D02G300300.1, TraesCS3A02G220600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb358160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29249 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8215 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1403, evm.TU.LG20.482 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.311 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30787 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2448 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20999 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5905 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16820 |
| Salicaceae | Populus euphratica | 3 | populus_peu09955, populus_peu18054, populus_peu18071 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600637 |
| Solanaceae | Solanum chilense | 1 | SOLCI006290700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005159 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6551 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1440 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06380.v3.1 |