Basic Information
Locus ID:
Ag8G00835
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 68077395 | 68090225 | - | Ag8G00835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 51,656.26 Da | 46.05 | 84.85 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 161 | 407 | 5.73041E-83 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 37 | 125 | 6.1E-13 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 156 | 407 | 3.1E-54 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 160 | 407 | 5.19E-63 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 26 | 126 | 3.42E-25 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 135 | 1.8E-28 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 136 | 447 | 1.3E-69 | - |
| SMART | SM00248 | ANK_2a | 98 | 127 | 1.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 32 | 61 | 400.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 65 | 94 | 2.0E-5 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 4 | 431 | 2.4E-178 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 65 | 97 | 13.38388 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 65 | 97 | 12.009989 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 115 | 410 | 38.421173 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.1 | Integrin-linked protein kinase family. | 0 |
| RefSeq | XP_017219985.1 | PREDICTED: serine/threonine-protein kinase STY17-like [Daucus carota subsp. sativus] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YLZ6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027963 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.847395 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.595675 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.816232 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.323696 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.395147 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.585245 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.039879 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.159497 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.489944 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.669529 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.41054 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.60882 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.702032 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.313309 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.047306 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.662266 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.321999 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.56308 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.835608 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.162212 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.034443 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.210085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.898603 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.304293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.658314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.924971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.543203 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.491613 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.896019 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.703621 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.749117 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.010047 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.791521 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.658318 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.999101 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.652517 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.38481 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.161144 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.814203 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.645032 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.02514 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.604406 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.76321 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.008307 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.596931 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.275471 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.726825 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.334473 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.168381 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.175451 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20681, jg21303, jg24979 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22390 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016807, Ah038020 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g188320, BVRB_9g205990 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg40319, Sbi_jg50313, Sbi_jg50937, Sbi_jg60367 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1903, Seu_jg22440, Seu_jg22919 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011479, GOSA_00015793 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl45611, Sgl50392, Sgl78356, Sgl78369, Sgl80870, Sgl80875 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009827, gene:ENSEOMG00000018520 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0008000, CQ.Regalona.r1.8BG0008530 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30071200 |
| Apiaceae | Apium graveolens | 2 | Ag7G00848, Ag8G00835 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G014100, COCNU_06G003890, COCNU_14G002530 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103708951, gene-LOC103717204, gene-LOC120111735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.991.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G18528, Ftri5G24735 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G58760.1, AT4G18950.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005950m.g.v1.0, Thhalv10025157m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g04080.v2.2, Sp7g17660.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g017430.2N, BniB06g063270.2N, BniB07g023840.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2919, Ceq04G0476 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G3044, Cgl04G0573 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g04190, gene.Cymno16g05880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3414, nbisL1-mrna-4728 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.745 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004842, Pov_00008687 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb1G00263, Lb1G00381, Lb1G03698, Lb3G19740, Lb3G21243 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3177, BH02.3712, CH02.3252 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0033170, gene-QOZ80_1BG0083250 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0288750.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_043004, gene-QYE76_048211, gene-QYE76_055273 |
| Poaceae | Oryza coarctata | 3 | Oco01G019210, Oco02G020630, Oco22G005700 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g54480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G275400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602206 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G009780, Chr03G016080, Chr05G023700, Chr08G016130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G450700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG040580, gene_TRIDC3BG045720 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G272900.1, TraesCS3B02G306500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb153180_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11132 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG16.1263, evm.TU.LG18.212, evm.TU.LG18.965 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g17580, gene.Posoc09g00430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.427, evm.TU.Scaffold_9_RagTag.1572 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20743, nbisL1-mrna-20754, nbisL1-mrna-30703 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1535, nbisL1-mrna-9957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22060 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.992, evm.TU.utg000015l.214 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009530, Maker00015288 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13976, nbisL1-mrna-4125 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21532, nbisL1-mrna-4522 |
| Salicaceae | Populus euphratica | 1 | populus_peu09874 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618009, gene-LOC132625018 |
| Solanaceae | Solanum chilense | 1 | SOLCI003234500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011645, gene-LOC107012425, gene-LOC107026576 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4682, gene_5393 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0435, TC02G2816, TC08G0364 |
| Zosteraceae | Zostera marina | 2 | Zosma01g05540.v3.1, Zosma04g04670.v3.1 |