Basic Information
Locus ID:
Ag8G00833
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
STICHEL-like 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 67431480 | 67439916 | - | Ag8G00833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 131,478.77 Da | 52.13 | 84.06 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 473 | 632 | 0.00468892 | - |
| CDD | cd18137 | HLD_clamp_pol_III_gamma_tau | 632 | 695 | 4.68868E-16 | IPR045085 |
| Pfam | PF13177 | DNA polymerase III, delta subunit | 475 | 632 | 3.6E-20 | - |
| Pfam | PF12169 | DNA polymerase III subunits gamma and tau domain III | 689 | 746 | 4.3E-6 | IPR022754 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 457 | 681 | 8.56E-40 | IPR027417 |
| SUPERFAMILY | SSF48019 | post-AAA+ oligomerization domain-like | 703 | 805 | 2.47E-7 | IPR008921 |
| Gene3D | G3DSA:1.10.8.60 | - | 633 | 695 | 3.3E-14 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 450 | 629 | 3.6E-39 | IPR027417 |
| TIGRFAM | TIGR02397 | dnaX_nterm: DNA polymerase III, subunit gamma and tau | 458 | 806 | 9.0E-98 | IPR012763 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 222 | - | - |
| Coils | Coil | Coil | 775 | 795 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18820.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_017223059.1 | PREDICTED: protein STICHEL-like 3 isoform X2 [Daucus carota subsp. sativus] | 0 |
| F4JRP0 | Protein STICHEL-like 3 OS=Arabidopsis thaliana OX=3702 GN=At4g18820 PE=3 SV=1 | 0 | |
| TrEMBL | A0A175YLL6 | AAA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027972 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.702166 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.650655 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.712359 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.674849 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.856063 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.124257 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.379557 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.547978 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.071426 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.523603 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.297812 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.605183 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.690443 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.485121 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.68258 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.676233 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.9772 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.355444 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.657828 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.313536 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.399865 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.046315 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.656405 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.35382 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.873354 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.343982 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.532422 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.646354 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.243433 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.616462 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.725301 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.205403 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.203218 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.523454 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.682915 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.308249 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.101528 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.223019 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.219261 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.581585 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.240272 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.78879 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.03475 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.570565 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.740681 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.359014 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.509588 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.010996 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.752564 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.97001 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg22181, jg24972, jg38722, jg38723 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_484 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016914 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40342, Sbi_jg50336 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1927 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011506 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45574, Sgl50356 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010680, gene:ENSEOMG00000032545 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0007530, CQ.Regalona.r1.8BG0007680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30071850 |
| Apiaceae | Apium graveolens | 2 | Ag11G04873, Ag8G00833 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003690, COCNU_14G002400 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697730, gene-LOC103708968 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3469.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G00089, Ftri5G23822 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G18820.1, AT5G45720.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000763m.g.v1.0, Thhalv10024266m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g10610.v2.2, Sp7g17530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g062680.2N, BniB04g016090.2N, BniB05g017530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0515 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0617 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15390 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g19880 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3823 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.773 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005539 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3067, AH05.1645, BH02.3153, BH05.1797, CH02.3371 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0032060, gene-QOZ80_1BG0082270 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0082180.1, HORVU.MOREX.r3.3HG0286720.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016028, gene-QYE76_017515, gene-QYE76_055433 |
| Poaceae | Oryza coarctata | 4 | Oco01G019910, Oco02G019860, Oco09G014940, Oco10G014870 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53070.1, LOC_Os05g45340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G265300, gene-BS78_09G211200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503989, Pt_Chr0504077 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G014400, Chr02G010490, Chr03G015480, Chr05G022910 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G546500, Tel3E01G463500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG051480, gene_TRIDC1BG058720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G348900.1, TraesCS1B02G364000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb154140_P002, Zm00001eb293320_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25075, nbis-gene-26380 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11068, Zma_g28651 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.951, evm.TU.LG20.925 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.649, evm.TU.Scaffold_13_RagTag.271 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24075 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11973, nbisL1-mrna-15076, nbisL1-mrna-1603 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-19806, nbisL1-mrna-19807, nbisL1-mrna-20946 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.164, evm.TU.utg000027l.183 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015809, Maker00017839 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-5799, nbisL1-mrna-5931 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16857, nbisL1-mrna-19130 |
| Salicaceae | Populus euphratica | 5 | populus_peu09900, populus_peu09901, populus_peu17990 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622026 |
| Solanaceae | Solanum chilense | 1 | SOLCI005160500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011229 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5402 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0987, TC08G0387 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07080.v3.1, Zosma04g27230.v3.1 |