Basic Information
Locus ID:
Ag8G00825
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 66814937 | 66823465 | - | Ag8G00825 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 39,443.94 Da | 50.80 | 78.43 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 287 | 334 | 2.1E-11 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 48 | 256 | 6.28E-28 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 284 | 341 | 3.28E-16 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 48 | 262 | 2.4E-11 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 274 | 349 | 4.0E-17 | - |
| SMART | SM00326 | SH3_2 | 283 | 338 | 4.8E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 280 | 339 | 20.7127 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 285 | 305 | 1.0E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 305 | 321 | 1.0E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 321 | 334 | 1.0E-5 | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 192 | 212 | - | - |
| Coils | Coil | Coil | 149 | 183 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18060.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_017220346.1 | PREDICTED: SH3 domain-containing protein 3 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8L7W0 | SH3 domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=SH3P3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6M4L9 | SH3 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_36735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.193581 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.086828 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.694531 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.488517 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.54305 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.525189 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.816475 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.82681 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.548134 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.852383 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.275948 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.053349 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.291996 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.640633 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.154484 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 44.845459 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 40.749664 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.177158 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 27.172115 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.729469 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 36.946308 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.436676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 45.223099 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 45.348808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 41.849136 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.292168 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.781391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 27.987484 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 36.592857 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.884826 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.965947 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.833194 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.32563 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.392809 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.673455 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.475642 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.111978 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.068107 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 30.538347 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.796951 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.560946 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 136.617401 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 58.130192 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.856993 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.577746 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 133.438721 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.510656 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 48.857677 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.027702 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 43.59774 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22213 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_516 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016678, Ah038605 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40531, Sbi_jg50567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018066 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl45154, Sgl45157, Sgl45271, Sgl49942, Sgl50053 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010040, gene:ENSEOMG00000032542 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008400, CQ.Regalona.r1.8BG0009500 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30070700, pistato.v30243060 |
| Apiaceae | Apium graveolens | 1 | Ag8G00825 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012240 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1154.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G02755 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025600m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g072240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0424 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0521 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12092 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.714 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038412 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14544 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.3111, AH07.114, BH03.3295, CH03.3480 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568640, gene-QOZ80_7BG0599950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041124 |
| Poaceae | Oryza coarctata | 2 | Oco13G008250, Oco14G008720 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G288700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304161, Pt_Chr0405483 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G005870, Chr24G008230, Chr27G011430, Chr28G007550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G419800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030240, gene_TRIDC2BG033910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G226200.1, TraesCS2B02G249500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105750_P001, Zm00001eb331320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-929 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.139, evm.TU.LG26.910 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g17680, gene.Posoc04g21580, gene.Posoc10g03620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.851 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5491 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17176 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.64 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11079 |
| Salicaceae | Populus euphratica | 2 | populus_peu00964, populus_peu17951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622159 |
| Solanaceae | Solanum chilense | 1 | SOLCI004243600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008662 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5809 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2834 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23010.v3.1 |