Basic Information
Locus ID:
Ag8G00767
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein At5g46170-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 53624286 | 53627639 | + | Ag8G00767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 41,889.04 Da | 49.33 | 94.65 | -0.08 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46170.1 | F-box family protein. | 0 |
| RefSeq | XP_017222618.1 | PREDICTED: F-box protein At5g46170-like [Daucus carota subsp. sativus] | 0 |
| Q9FNK5 | F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YM53 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.249683 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.387491 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.052143 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.172544 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.529928 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.33041 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.864462 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 24.339998 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.979942 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.663376 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 41.527988 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.274307 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 35.660217 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 34.863102 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.919786 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.934711 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.336761 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.186189 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.22107 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.32786 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.959852 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.464525 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.760351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.547411 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.998991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.104204 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.887936 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.796251 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.90872 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.18979 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.108288 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.166527 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 31.696087 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.758421 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 28.42207 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 25.426228 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.353682 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.063148 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.479446 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.928141 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.546597 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.555195 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.781116 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.660648 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 34.604942 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.013973 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.744745 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.480574 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.41927 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.797987 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20775, jg22282, jg25021, jg38760 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_606 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016312 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40583, Sbi_jg50612 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2169 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029116 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45105, Sgl49877, Sgl49923 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009224, gene:ENSEOMG00000032584 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0009740, CQ.Regalona.r1.8BG0010770 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30051090, pistato.v30057670 |
| Apiaceae | Apium graveolens | 2 | Ag11G04926, Ag8G00767 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G016070, COCNU_06G020410, COCNU_12G005370 ... |
| Arecaceae | Phoenix dactylifera | 7 | gene-LOC103697030, gene-LOC103703693, gene-LOC103704990 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1272.V1.1, AsparagusV1_06.1886.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G28598, Ftri15G08350, Ftri5G07547, Ftri5G33564 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G30200.2, AT4G18380.1, AT5G46170.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000919m.g.v1.0, Thhalv10007915m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26020.v2.2, Sp2g11030.v2.2, Sp7g15660.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g011150.2N, BniB04g045540.2N, BniB05g018060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0211 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0299 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno01g09140, gene.Cymno02g17820, gene.Cymno02g17840 ... |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g22400, gene.Thate05g03810, gene.Thate07g01890 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3808, nbisL1-mrna-4674, nbisL1-mrna-7531 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.69 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013120, Pov_00038501 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25554 |
| Poaceae | Echinochloa crus-galli | 13 | AH01.3814, AH02.3408, AH05.1792, AH05.1964, BH01.4154 ... |
| Poaceae | Eleusine coracana subsp. coracana | 10 | gene-QOZ80_1AG0034810, gene-QOZ80_1AG0037310 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.1HG0069870.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_013970, gene-QYE76_014834, gene-QYE76_055851 ... |
| Poaceae | Oryza coarctata | 10 | Oco01G021360, Oco01G022930, Oco02G022190, Oco02G023650 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g56390.1, LOC_Os01g59690.1, LOC_Os03g20500.1 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_01G301400, gene-BS78_01G370700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0405679, Pt_Chr0605567, Pt_Chr0605580 |
| Poaceae | Sporobolus alterniflorus | 20 | Chr01G017240, Chr01G018090, Chr01G033440, Chr02G006690 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G496600, Tel1E01G536300, Tel3E01G498200 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG045730, gene_TRIDC1AG048900 ... |
| Poaceae | Triticum aestivum | 16 | TraesCS1A02G307800.1.cds1, TraesCS1A02G329300.1.cds1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb106070_P001, Zm00001eb139210_P001 ... |
| Poaceae | Zoysia japonica | 8 | nbis-gene-11796, nbis-gene-14295, nbis-gene-14388 ... |
| Poaceae | Zoysia macrostachya | 9 | Zma_g11235, Zma_g11383, Zma_g1320, Zma_g26895, Zma_g26965 ... |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG10.181, evm.TU.LG17.177, evm.TU.LG18.1079 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g28800, gene.Posoc02g06490, gene.Posoc03g16700 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.913, evm.TU.Scaffold_16_RagTag.829 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24992, nbisL1-mrna-840 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12979, nbisL1-mrna-3884 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17228, nbisL1-mrna-19201 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000025l.42, evm.TU.utg000022l.78 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00012271, Maker00016107, Maker00016159 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16812, nbisL1-mrna-20194 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10313, nbisL1-mrna-9130 |
| Salicaceae | Populus euphratica | 2 | populus_peu09857, populus_peu22152 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609180, gene-LOC132621858 |
| Solanaceae | Solanum chilense | 2 | SOLCI006023400, SOLCI007434200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011125, gene-LOC107028832 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10823_chr07_-, STRG.18321_chr09_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1052, TC07G1906 |
| Zosteraceae | Zostera marina | 4 | Zosma01g32910.v3.1, Zosma01g42750.v3.1, Zosma01g42760.v3.1 ... |