Basic Information
Locus ID:
Ag8G00760
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
P21-activated protein kinase-interacting protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 52107010 | 52109565 | - | Ag8G00760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 35,635.91 Da | 28.88 | 86.34 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 30 | 64 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 283 | 0.035 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 285 | 8.61E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 114 | 332 | 1.8E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 113 | 8.1E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 27 | 64 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 232 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 67 | 110 | 0.69 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 283 | 4.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 152 | 0.68 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 34 | 73 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 292 | 9.505904 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 270 | 284 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 219 | 233 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 51 | 65 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 270 | 284 | 1.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65030.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_017220403.1 | PREDICTED: p21-activated protein kinase-interacting protein 1-like [Daucus carota subsp. sativus] | 0 |
| Q6TNS2 | p21-activated protein kinase-interacting protein 1-like OS=Danio rerio OX=7955 GN=pak1ip1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YNH3 | P21-activated protein kinase-interacting protein 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027897 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.67094 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.805033 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.702001 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.706471 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.410629 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.68682 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.486588 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.895201 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.992249 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.533095 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.138584 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.621931 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.456182 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.832854 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.266898 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.162174 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.639141 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.23858 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.900337 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.253743 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.520114 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.346222 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.691786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.534995 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.073811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.524572 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.139236 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.649167 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.502041 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.661439 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.649483 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.078341 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.710569 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.993821 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.780155 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.519174 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.288886 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.461403 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.827515 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.813147 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.042427 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.641041 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.17654 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.230171 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.171405 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.180134 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.047013 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.118248 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.620166 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.623782 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22291 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20162 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27173, Sbi_jg33373 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8059 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005731 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71280, Sgl74873 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006937, gene:ENSEOMG00000037699 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0008130, CQ.Regalona.r1.7AG0018330 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30258690, pistato.v30258950 |
| Apiaceae | Apium graveolens | 1 | Ag8G00760 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020170, COCNU_14G008620 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710520 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3436.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G03450 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G65030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018816m.g.v1.0, Thhalv10019798m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22530.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g044750.2N, BniB05g064080.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G0184, Ceq04G0193, Ceq04G0200 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0273, Cgl04G0281 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno17g04390, gene.Cymno17g04420, gene.Cymno17g04430 ... |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0005s00040.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g11660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4678 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2775, evm.TU.LG03.1339 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008761 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00071 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.4071, BH05.4168, CH05.4390, Contig1909.2 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0398100, gene-QOZ80_5BG0446700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0427150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000969 |
| Poaceae | Oryza coarctata | 2 | Oco23G010510, Oco24G010350 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g42150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G149600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704480, Pt_Chr0704505 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G019190, Chr19G007570, Chr27G009140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G081100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG004920, gene_TRIDC5BG005520 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G033600.1, TraesCS5B02G033700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb328580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47500 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26137 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1615 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g35080, gene.Posoc02g23370, gene.Posoc04g15110 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.925, evm.TU.Scaffold_16_RagTag.843 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25000 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12987 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19209 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016099 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-70 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10305 |
| Salicaceae | Populus euphratica | 1 | populus_peu30363 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645512 |
| Solanaceae | Solanum chilense | 1 | SOLCI002446300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008933 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16786 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1062 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23590.v3.1 |