Basic Information
Locus ID:
Ag8G00755
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 51142107 | 51143086 | - | Ag8G00755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 18,695.32 Da | 26.77 | 62.40 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18345 | Zinc finger domain | 56 | 74 | 6.2E-7 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 50 | 75 | 8.5E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 71 | 126 | 9.16E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 77 | 140 | 3.4E-7 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 6 | 76 | 2.6E-5 | - |
| SMART | SM00320 | WD40_4 | 81 | 120 | 2.5E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 50 | 76 | 5.6E-6 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 88 | 129 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 50 | 77 | 13.826015 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 88 | 120 | 9.388329 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017243634.1 | PREDICTED: zinc finger CCCH domain-containing protein 48-like [Daucus carota subsp. sativus] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZYV4 | Zinc finger CCCH domain-containing protein 48-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology