Basic Information
Locus ID:
Ag8G00731
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 45307784 | 45309155 | - | Ag8G00731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 15,068.73 Da | 56.30 | 76.92 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.290543 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.54203 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.757642 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.876991 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.686836 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.121458 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.262152 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.039322 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.115108 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.608147 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.257039 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.522059 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.425497 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.580053 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.058247 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.018418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.268314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.178841 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.41174 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.012115 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.35526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.405496 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.871698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.07447 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.147114 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.117561 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.210152 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.234298 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.445205 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.321158 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.381346 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.377537 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.012545 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.299972 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.955985 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.707879 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.230747 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10786, jg28527, jg6144 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23371 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023696 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g007670, BVRB_6g143310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4182, Sbi_jg49615 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5632 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001037 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10589, Sgl15840 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015198, gene:ENSEOMG00000035176 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0010510, CQ.Regalona.r1.1BG0015340 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30041920, pistato.v30102610 |
| Apiaceae | Apium graveolens | 4 | Ag3G00072, Ag4G01897, Ag8G00731, Ag9G00258 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000660, COCNU_08G001380 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696967, gene-LOC103717376, gene-LOC120112442 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1748.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G21856, Ftri1G13622, Ftri4G17092 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09730.1, AT4G33620.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006645m.g.v1.0, Thhalv10024447m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08320.v2.2, Sp7g31340.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g003490.2N, BniB04g030040.2N, BniB05g004480.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1209 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1313 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g08070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8786 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.220, evm.TU.LG08.725 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002155 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27680 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1411, BH01.1234, CH01.1285 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0209180, gene-QOZ80_7BG0584430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0530050.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019868, gene-QYE76_055950 |
| Poaceae | Oryza coarctata | 2 | Oco09G004430, Oco10G004340 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g11770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G340500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201207, Pt_Chr0601729 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000830, Chr04G032200, Chr07G031250, Chr12G032350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G797400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG053490, gene_TRIDC5BG076740 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G358100.2, TraesCS5B02G514400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb367170_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16699 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1904, evm.TU.LG06.438 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g03640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.499, evm.TU.Scaffold_7_RagTag.920 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19385, nbisL1-mrna-4694, nbisL1-mrna-9417 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18073, nbisL1-mrna-2054, nbisL1-mrna-4923 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20545, nbisL1-mrna-3583, nbisL1-mrna-6751 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.707, evm.TU.utg000009l.661 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003366, Maker00005893, Maker00010679 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13055, nbisL1-mrna-2603 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10167, nbisL1-mrna-16574 |
| Salicaceae | Populus euphratica | 8 | populus_peu14561, populus_peu22723, populus_peu24157 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598835, gene-LOC132627109 |
| Solanaceae | Solanum chilense | 4 | SOLCI000739400, SOLCI000769600, SOLCI004187100 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004737, gene-LOC107008281 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17462, gene_9608 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G3037 |
| Zosteraceae | Zostera marina | 2 | Zosma01g34970.v3.1, Zosma05g27520.v3.1 |