Basic Information
Locus ID:
Ag8G00629
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the iron ascorbate-dependent oxidoreductase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 31877989 | 31885376 | + | Ag8G00629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 34,991.58 Da | 49.51 | 91.11 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14226 | non-haem dioxygenase in morphine synthesis N-terminal | 7 | 114 | 4.4E-30 | IPR026992 |
| Pfam | PF03171 | 2OG-Fe(II) oxygenase superfamily | 177 | 266 | 3.1E-19 | IPR044861 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 5 | 305 | 9.61E-91 | - |
| Gene3D | G3DSA:2.60.120.330 | - | 3 | 306 | 5.5E-100 | IPR027443 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 159 | 267 | 12.498729 | IPR005123 |
| PRINTS | PR00682 | Isopenicillin N synthase signature | 255 | 273 | 2.9E-15 | - |
| PRINTS | PR00682 | Isopenicillin N synthase signature | 138 | 154 | 2.9E-15 | - |
| PRINTS | PR00682 | Isopenicillin N synthase signature | 24 | 41 | 2.9E-15 | - |
| PRINTS | PR00682 | Isopenicillin N synthase signature | 228 | 254 | 2.9E-15 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16765.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 0 |
| RefSeq | XP_017222578.1 | PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase-like [Daucus carota subsp. sativus] | 0 |
| P0DXH9 | Azadirone synthase LFS OS=Melia azedarach OX=155640 GN=LFS PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YPR9 | Fe2OG dioxygenase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027756 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.040553 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.655908 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.132936 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.350329 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.634517 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.333234 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.001104 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.712991 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 48.758732 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 41.536167 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.693653 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.223146 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.208916 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.177265 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.002518 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.400286 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.8032 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.175602 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.557896 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.484755 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.636259 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.28809 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.867485 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.467926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.352812 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.645058 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.72146 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.461845 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.913677 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.852491 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.98949 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.27344 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.441185 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.140512 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.737478 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.50209 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.698322 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.752485 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.39069 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.711165 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.674881 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.923286 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.412466 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.7658 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.720715 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.303053 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.015211 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.593475 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.381359 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.849068 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32976, jg5005 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_1997, gene_1998, gene_1999, gene_9113 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004064, Ah014635 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g104690, BVRB_5g104700, BVRB_8g197380 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg14362, Sbi_jg24202, Sbi_jg25055, Sbi_jg8035 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10213, Seu_jg12000, Seu_jg19694 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007731, GOSA_00010787 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42297, Sgl47072, Sgl52418, Sgl57705 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000005684, gene:ENSEOMG00000006335 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0004220, CQ.Regalona.r1.5AG0004230 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257140 |
| Apiaceae | Apium graveolens | 3 | Ag10G01507, Ag8G00629, Ag8G00630 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G014810, COCNU_10G003660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708345, gene-LOC103711669 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3271.V1.1, AsparagusV1_06.1220.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G19248, Ftri3G02121 |
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G35190.1, AT3G46480.1, AT3G46490.1, AT3G46500.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10001822m.g.v1.0, Thhalv10002591m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g29930.v2.2, Sp5g15180.v2.2, Sp7g17340.v2.2 ... |
| Brassicaceae | Brassica nigra | 10 | BniB02g072970.2N, BniB03g036290.2N, BniB05g019500.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0726, Ceq06G1556 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0826, Cgl06G1610 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g06320 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0078s00018.v1.0, Dusal.0180s00008.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15910, gene.Thate01g15920 |
| Nitrariaceae | Nitraria sibirica | 6 | evm.TU.LG02.1240, evm.TU.LG07.1147, evm.TU.LG08.866 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003465, Pov_00003466, Pov_00032225 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb2G08423, Lb2G08424, Lb2G08425, Lb2G08450, Lb5G26472 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3140, BH01.3496, BH02.373, CH02.414, CH09.275 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0012760, gene-QOZ80_1BG0061430 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0051510.1, HORVU.MOREX.r3.3HG0236880.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012208, gene-QYE76_050188 |
| Poaceae | Oryza coarctata | 4 | Oco01G003810, Oco14G000610, Oco19G008460, Oco20G008310 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g09300.1, LOC_Os10g37880.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G308400, gene-BS78_02G193400 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0200010, Pt_Chr0306152, Pt_Chr0700304, Pt_Chr0704754 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G020640, Chr03G006170, Chr05G011470, Chr09G003170 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G326100, Tel3E01G189000, Tel7E01G959100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG028490, gene_TRIDC1BG032810 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G188200.2, TraesCS1B02G196000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb337550_P006, Zm00001eb404630_P005 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13289, nbis-gene-34447, nbis-gene-34453 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15549, Zma_g15551, Zma_g7780 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.2808, evm.TU.LG02.2809, evm.TU.LG02.2810 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g13840, gene.Posoc03g22230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.458, evm.TU.Scaffold_14_RagTag.378 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13065, nbisL1-mrna-17978 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12719, nbisL1-mrna-20881 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16855 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.139, evm.TU.utg000033l.313 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014692, Maker00018304 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16163, nbisL1-mrna-4068 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10716, nbisL1-mrna-8249 |
| Salicaceae | Populus euphratica | 2 | populus_peu05399, populus_peu33908 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132638170, gene-LOC132641000, gene-LOC132641038 |
| Solanaceae | Solanum chilense | 2 | SOLCI002552700, SOLCI005318100 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107018459, gene-LOC107021379, gene-LOC107028210 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15575, gene_8028 |
| Tamaricaceae | Tamarix chinensis | 3 | TC06G0456, TC09G0331, TC10G1480 |
| Zosteraceae | Zostera marina | 3 | Zosma03g36940.v3.1, Zosma05g25290.v3.1, Zosma06g25770.v3.1 |