Basic Information
Locus ID:
Ag8G00598
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CRNKL1
Description:
Crooked neck-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 28136515 | 28142154 | + | Ag8G00598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 84,402.01 Da | 49.29 | 77.94 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02184 | HAT (Half-A-TPR) repeat | 207 | 235 | 1.0E-10 | IPR003107 |
| SUPERFAMILY | SSF48452 | TPR-like | 193 | 262 | 7.97E-14 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 81 | 192 | 1.11E-21 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 263 | 523 | 9.48E-43 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 323 | 521 | 9.0E-46 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 115 | 322 | 3.1E-51 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 522 | 591 | 4.1E-10 | IPR011990 |
| SMART | SM00386 | hat_new_1 | 503 | 537 | 5.3E-5 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 276 | 310 | 0.048 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 71 | 103 | 1.7 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 398 | 434 | 1.5E-4 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 539 | 570 | 2.1E-4 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 139 | 171 | 3.1E-5 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 436 | 467 | 52.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 320 | 352 | 250.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 354 | 388 | 1.7E-6 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 469 | 501 | 2.5E-4 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 239 | 274 | 2.9E-4 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 105 | 137 | 3.0E-4 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 206 | 237 | 4.4E-4 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 173 | 204 | 5.9E-5 | IPR003107 |
| Coils | Coil | Coil | 495 | 515 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41770.1 | crooked neck protein, putative / cell cycle protein, putative. | 0 |
| RefSeq | XP_017223184.1 | PREDICTED: crooked neck-like protein 1 [Daucus carota subsp. sativus] | 0 |
| P63154 | Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A118JTB7 | RNA-processing protein, HAT helix OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007989 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 26.948755 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.152246 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.386887 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.260757 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.288567 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.788212 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.105818 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 21.494165 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 51.401096 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 51.166145 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 48.974586 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 52.765358 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.768986 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.675987 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.2743 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.53721 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.237396 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.717409 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.605911 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.965523 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.724733 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.458555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.982426 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.311239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.119488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.828581 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.615389 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.226763 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.147648 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.988765 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.996495 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.103779 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.436024 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.450937 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.817715 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.181183 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.136583 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.233054 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.998119 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.513739 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.730049 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.046345 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.20962 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.542866 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 42.156872 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.943533 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.852432 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.732704 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.961494 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.187286 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7680 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1778 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004491, Ah014257 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g025720, BVRB_5g099320 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20652, Sbi_jg20653, Sbi_jg20654, Sbi_jg23103 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16967, Seu_jg16968 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009220, GOSA_00009221 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51884, Sgl57179, Sgl63416, Sgl67896 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009166, gene:ENSEOMG00000010973 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0006500, CQ.Regalona.r1.8AG0022770 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150190, pistato.v30186820 |
| Apiaceae | Apium graveolens | 4 | Ag1G01104, Ag8G00598, Ag9G02006, Ag9G02007 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G003250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708791 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1129.V1.1, AsparagusV1_01.2642.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G22652, Ftri16G19065 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G13210.1, AT3G51110.1, AT5G41770.1, AT5G45990.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10024572m.g.v1.0, Thhalv10027428m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g12900.v2.2, Sp5g11100.v2.2, Sp6g03340.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB01g024450.2N, BniB02g070690.2N, BniB04g043860.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0036, Ceq09G1968 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl03G0045, Cgl03G0221, Cgl03G0244, Cgl09G2148 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12710 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0283s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24710 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2213, evm.TU.LG10.518 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00011747, Pov_00017025, Pov_00017071, Pov_00017072 ... |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05694, Lb2G09230, Lb2G09231, Lb6G31245 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.2433, AH06.1803, BH05.2529, BH06.1671, CH05.2627 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0228580, gene-QOZ80_3BG0274830 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0492710.1, HORVU.MOREX.r3.7HG0719340.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016627, gene-QYE76_034296, gene-QYE76_053720 |
| Poaceae | Oryza coarctata | 5 | Oco07G006390, Oco15G005570, Oco19G002250, Oco20G002350 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os05g22260.1, LOC_Os06g33250.1, LOC_Os10g18150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G229600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400226, Pt_Chr0400238 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G023830, Chr04G013590, Chr07G013010, Chr07G013020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G636100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG045710, gene_TRIDC7AG049060 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5B02G277100.1, TraesCS5D02G284700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb051990_P001, Zm00001eb217360_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12195, nbis-gene-47219 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3475, Zma_g993 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3290, evm.TU.LG16.310 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.104 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22349, nbisL1-mrna-9386 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4388 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20378 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.430 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014416 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3571 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6741 |
| Salicaceae | Populus euphratica | 6 | populus_peu03655, populus_peu03656, populus_peu03657 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603813, gene-LOC132606039 |
| Solanaceae | Solanum chilense | 1 | SOLCI003387600 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107007401, gene-LOC107012936, gene-LOC107013046 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23357_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0610 |
| Zosteraceae | Zostera marina | 1 | Zosma05g16320.v3.1 |