Basic Information
Locus ID:
Ag8G00592
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 27445897 | 27450254 | - | Ag8G00592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 36,742.90 Da | 28.09 | 85.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 315 | 1.63E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 325 | 8.2E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 96 | 139 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 258 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 9.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 309 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 309 | 9.625601 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64350.1 | Transducin/WD40 repeat-like superfamily protein. seh1-like protein | 0 |
| RefSeq | XP_017220600.1 | PREDICTED: protein SEH1 [Daucus carota subsp. sativus] | 0 |
| Q93VR9 | Protein SEH1 OS=Arabidopsis thaliana OX=3702 GN=SEH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YMB6 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027714 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.240131 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.997354 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.623973 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.538015 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.085551 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.46833 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.31138 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.780397 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.607132 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.638201 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.622032 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.972553 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.400305 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.29566 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.89661 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.302954 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.045301 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.02356 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.842026 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 18.283354 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.107763 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.15534 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.688616 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.655991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.390167 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.422976 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.768988 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.233984 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.741342 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.001176 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.441894 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.955432 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.85625 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.16045 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.903381 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.953585 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.710982 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.669503 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.566163 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.217269 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.822408 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.738157 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.222783 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.485601 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.129848 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.877029 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.840189 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.067818 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 32.224625 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 41.852528 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37035 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1770 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003838 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24009, Sbi_jg7837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010615 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52175, Sgl57449 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005393, gene:ENSEOMG00000021555 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006060, CQ.Regalona.r1.5BG0006410 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30134630, pistato.v30136370 |
| Apiaceae | Apium graveolens | 1 | Ag8G00592 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695903 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.830.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G17214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G64350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023589m.g.v1.0, Thhalv10023957m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g00410.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g022780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0171 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0201 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0371s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11213 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1517 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005356 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08249 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2367, BH02.2472, CH02.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024860, gene-QOZ80_1BG0075490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0273010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053907 |
| Poaceae | Oryza coarctata | 1 | Oco02G015100 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G198000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603381, Pt_Chr0603423 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G008170, Chr03G011290, Chr05G018630, Chr08G011470 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G383000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG033540, gene_TRIDC3BG038060 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G223900.1, TraesCS3B02G253300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb159590_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29220 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8242 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.414, evm.TU.LG17.409 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.95 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22342 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4380 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20388 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.436, evm.TU.utg000022l.441 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014169, Maker00014289 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3578 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6751 |
| Salicaceae | Populus euphratica | 1 | populus_peu34519 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634808 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026812 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10501 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0088 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09210.v3.1 |