Basic Information
Locus ID:
Ag8G00447
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 19354908 | 19355591 | - | Ag8G00447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 26,001.85 Da | 46.23 | 95.33 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 96 | 144 | 3.4E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 173 | 193 | 0.48 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 23 | 150 | 7.0E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 152 | 218 | 3.1E-7 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 99 | 134 | 3.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 69 | 98 | 4.8E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 66 | 100 | 9.700809 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71420.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_017238711.1 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Daucus carota subsp. sativus] | 0 |
| Q9C9H9 | Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166GC05 | Pentatricopeptide repeat-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001446 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.032622 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.1071 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.52245 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.669184 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.936242 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.571141 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.699609 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.373281 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.206625 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.191263 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.671873 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.575839 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.994624 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.009059 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.311254 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.461578 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.614158 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.396073 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.645615 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.519796 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.359718 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.258823 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.197402 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.585028 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.916417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.892714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.587276 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.722053 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.535291 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.227492 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.186004 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.121109 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.679279 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.667874 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.825207 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.954174 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.244206 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.148556 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.112092 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.430459 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.586516 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.212492 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.533771 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.294613 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.395237 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.452901 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.632171 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.667738 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.8923 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.819958 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11248 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25745, Sbi_jg9569 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19068 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027955 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43994, Sgl48763 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032915 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0010700, CQ.Regalona.r1.8BG0013250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30147670 |
| Apiaceae | Apium graveolens | 3 | Ag8G00446, Ag8G00447, Ag8G00456 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G009690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722287 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.972.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1761 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.195 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019796, Pov_00019797 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2701, BH09.2938, CH09.3147 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299520, gene-QOZ80_4BG0330210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210280.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047403 |
| Poaceae | Oryza coarctata | 2 | Oco07G019200, Oco08G018450 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G285700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300156 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G000970, Chr26G018310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G955000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG077900, gene_TRIDC2BG085350 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G555200.1.cds1, TraesCS2B02G588700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6189 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22218 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.525, evm.TU.LG04.239 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.773 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14448 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-216 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12381 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000061l.12 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17107 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632400 |
| Solanaceae | Solanum chilense | 1 | SOLCI006293100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013065 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9558 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1770 |
| Zosteraceae | Zostera marina | 1 | Zosma01g08490.v3.1 |