halophFGD

Basic Information

Locus ID: Ag8G00405

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Hypoxia induced protein conserved region

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	16850577	16851208	+	Ag8G00405

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.30	8,869.13 Da	49.57	90.37	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04588	Hypoxia induced protein conserved region	11	60	7.9E-8	IPR007667
Gene3D	G3DSA:6.10.140.1320	-	13	74	9.0E-7	-
ProSiteProfiles	PS51503	HIG1 domain profile.	1	77	18.603039	IPR007667

Best hit

Source	Best Hit ID	Description
TAIR	AT5G27760.1	Hypoxia-responsive family protein.
RefSeq	XP_021297231.1	uncharacterized protein LOC110426345 [Herrania umbratica]
TrEMBL	A0A175YKD4	HIG1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028543 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	99.322769	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	74.131439	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	37.525677	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	38.524208	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	26.091221	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.593367	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	98.061356	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	45.291622	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.760767	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.505111	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.391154	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.898535	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.671582	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.237414	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.387002	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.025353	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.410564	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.825736	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	20.307072	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.348804	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.41924	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.203517		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.542325		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.754367	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	30.886707	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.119346	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.493678	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.343979	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.286588	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.165865	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.721783	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg11238, jg14210, jg1423, jg2520, jg28046, jg5666
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10399, gene_17059, gene_17060
Amaranthaceae	Atriplex hortensis	2	Ah005726, Ah035097
Amaranthaceae	Beta vulgaris	2	BVRB_2g029760, BVRB_4g075890
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17166, Sbi_jg21547, Sbi_jg22272, Sbi_jg61777
Amaranthaceae	Salicornia europaea	2	Seu_jg16201, Seu_jg429
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008793, GOSA_00015360
Amaranthaceae	Suaeda glauca	6	Sgl24457, Sgl31616, Sgl32177, Sgl37471, Sgl62743, Sgl67360
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000011000, gene:ENSEOMG00000028004 ... gene:ENSEOMG00000042732
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1BG0020720, CQ.Regalona.r1.4AG0007980 ... CQ.Regalona.r1.4BG0008130
Apiaceae	Apium graveolens	3	Ag3G02264, Ag8G00405, Ag8G01720
Arecaceae	Cocos nucifera	4	COCNU_01G001770, COCNU_04G004200, COCNU_04G010200 ... COCNU_12G002450
Arecaceae	Phoenix dactylifera	5	gene-LOC103698163, gene-LOC103703614, gene-LOC103714403 ... gene-LOC103719721, gene-LOC120110168
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2130.V1.1, AsparagusV1_08.3172.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G24177, Ftri15G18690, Ftri17G32868
Brassicaceae	Arabidopsis thaliana	2	AT3G05550.1, AT5G27760.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005192m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g20920.v2.2, Sp3g04400.v2.2
Brassicaceae	Brassica nigra	2	BniB02g079010.2N, BniB04g004770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0053, Ceq06G1165
Casuarinaceae	Casuarina glauca	1	Cgl06G1216
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno03g02070, gene.Cymno04g14700, gene.Cymno05g17080 ... gene.Cymno05g17380, gene.Cymno06g04100
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g03070, gene.Thate01g31070, gene.Thate01g31750 ... gene.Thate06g03320, gene.Thate06g24340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1727, evm.TU.LG03.2481
Plantaginaceae	Plantago ovata	3	Pov_00007234, Pov_00011692, Pov_00026115
Plumbaginaceae	Limonium bicolor	2	Lb0G38042, Lb3G20567
Poaceae	Echinochloa crus-galli	11	AH03.4036, AH04.61, AH05.53, AH07.2424, BH03.4372, CH02.2467 ... CH04.152, CH05.39, CH07.143, CH07.2309, Contig2828.2
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0135940, gene-QOZ80_2BG0191480 ... gene-QOZ80_5AG0378950, gene-QOZ80_5BG0426060, gene-QOZ80_7AG0581530, gene-QOZ80_7BG0612600, gene-QOZ80_9AG0672330, gene-QOZ80_9BG0695900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0113270.1, HORVU.MOREX.r3.2HG0193770.1 ... HORVU.MOREX.r3.5HG0464780.1
Poaceae	Lolium multiflorum	2	gene-QYE76_023389, gene-QYE76_038816
Poaceae	Oryza coarctata	5	Oco03G014070, Oco04G014460, Oco13G015600, Oco14G016410 ... Ocoptg000061lG000510
Poaceae	Oryza sativa	4	LOC_Os02g37930.1, LOC_Os07g47670.2, LOC_Os11g02080.1 ... LOC_Os12g02040.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G387300, gene-BS78_04G179900 ... gene-BS78_08G003500, gene-BS78_08G003700
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0204498, Pt_Chr0204502, Pt_Chr0305547, Pt_Chr0702868 ... Pt_Chr0702874, Pt_Chr0703087
Poaceae	Sporobolus alterniflorus	10	Chr04G025340, Chr06G008640, Chr0G002620, Chr0G003450 ... Chr15G010200, Chr15G011150, Chr16G008340, Chr19G011600, Chr24G012580, Chr27G004480
Poaceae	Thinopyrum elongatum	5	Tel1E01G515600, Tel2E01G239300, Tel2E01G240000 ... Tel2E01G752200, Tel5E01G259200
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG013350, gene_TRIDC2AG063290 ... gene_TRIDC2BG016280, gene_TRIDC2BG067060, gene_TRIDC5AG024950, gene_TRIDC5BG026180, gene_TRIDC5BG064600, gene_TRIDC6BG050310
Poaceae	Triticum aestivum	10	TraesCS2A02G111000.1, TraesCS2A02G440800.1 ... TraesCS2B02G130000.1, TraesCS2B02G460200.1, TraesCS2D02G111700.1, TraesCS2D02G438000.1, TraesCS3B02G569100.1, TraesCS5A02G148900.1, TraesCS5B02G147500.1, TraesCS5D02G143900.1
Poaceae	Zea mays	7	Zm00001eb111350_P001, Zm00001eb183530_P001 ... Zm00001eb195180_P001, Zm00001eb245840_P001, Zm00001eb262690_P001, Zm00001eb276270_P001, Zm00001eb381190_P001
Poaceae	Zoysia japonica	3	nbis-gene-25818, nbis-gene-29780, nbis-gene-32115
Poaceae	Zoysia macrostachya	5	Zma_g13796, Zma_g16592, Zma_g20951, Zma_g24616, Zma_g7059
Portulacaceae	Portulaca oleracea	9	evm.TU.LG05.517, evm.TU.LG08.693, evm.TU.LG10.42 ... evm.TU.LG13.937, evm.TU.LG17.37, evm.TU.LG20.623, evm.TU.LG21.602, evm.TU.LG22.1301, evm.TU.LG25.807
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g32260, gene.Posoc01g33850, gene.Posoc02g08130
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.108, evm.TU.Scaffold_2_RagTag.2069 ... evm.TU.Scaffold_4_RagTag.894
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14144, nbisL1-mrna-14146, nbisL1-mrna-2730 ... nbisL1-mrna-2845, nbisL1-mrna-8169
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14202, nbisL1-mrna-20714, nbisL1-mrna-5144
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13673, nbisL1-mrna-14296
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.48, evm.TU.utg000012l.76
Rhizophoraceae	Kandelia obovata	2	Maker00005258, Maker00009978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12991, nbisL1-mrna-7883
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16143, nbisL1-mrna-18943, nbisL1-mrna-19368 ... nbisL1-mrna-97
Salicaceae	Populus euphratica	4	populus_peu13352, populus_peu15683, populus_peu19194 ... populus_peu19199
Solanaceae	Lycium barbarum	3	gene-LOC132610330, gene-LOC132626785, gene-LOC132645974
Solanaceae	Solanum chilense	2	SOLCI004614400, SOLCI005753000
Solanaceae	Solanum pennellii	2	gene-LOC107011133, gene-LOC107028491
Tamaricaceae	Reaumuria soongarica	5	MSTRG.9651_chr05_+, gene_5509, gene_5892, gene_9431 ... gene_9432
Zosteraceae	Zostera marina	2	Zosma01g28240.v3.1, Zosma06g21600.v3.1