Basic Information
Locus ID:
Ag8G00354
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 13014158 | 13014646 | - | Ag8G00354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.18 | 10,786.48 Da | 36.24 | 57.26 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 102 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017236246.1 | PREDICTED: large proline-rich protein bag6-A isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166DKS9 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006203 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.809143 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.446915 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.286679 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.734579 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.721047 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.00852 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.69697 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.874523 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.649666 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.76486 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.185875 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.119275 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.548056 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.790361 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.443516 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.327004 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.426614 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.23904 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.350902 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.255826 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.549526 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.423146 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.060185 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.901974 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.161043 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.809873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.818786 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.186611 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.411621 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.65412 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.808544 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.191425 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.805794 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.956091 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.139488 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.835907 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.194208 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.856637 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.404296 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.314824 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.906181 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.533427 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.650116 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.492073 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.520135 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.873499 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.498502 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.851986 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.377365 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.251951 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4628 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8925 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014199 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25456, Sbi_jg9309 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19292 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011088 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41866, Sgl46668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009121, gene:ENSEOMG00000032615 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023200, CQ.Regalona.r1.8BG0019150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179830 |
| Apiaceae | Apium graveolens | 2 | Ag11G04408, Ag8G00354 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715983 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.97.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G00561 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003804m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077850.2N, BniB04g003860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2485 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2623 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.105 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019330 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38266, Lb0G38267, Lb6G32004, Lb6G32012 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.318, CH03.467 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625670, gene-QOZ80_8BG0655230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231510.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032117 |
| Poaceae | Oryza coarctata | 2 | Oco15G005790, Oco16G005590 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g19830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G027900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201858 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G012400, Chr17G011730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G144200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009430, gene_TRIDC3BG013280 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G079200.2, TraesCS3B02G094400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45895 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1092, evm.TU.LG05.1636 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18170, gene.Posoc03g12030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.109 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13900 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21296 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16545 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015182 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16703 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14504 |
| Salicaceae | Populus euphratica | 2 | populus_peu05666, populus_peu11030 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606074, gene-LOC132625479, gene-LOC132625485 |
| Solanaceae | Solanum chilense | 1 | SOLCI003292800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023172 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9024 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1143 |
| Zosteraceae | Zostera marina | 2 | Zosma05g18810.v3.1, Zosma05g18820.v3.1 |