halophFGD

Basic Information

Locus ID: Ag8G00324

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phosphoinositide 3-kinase regulatory subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	9830648	9841532	+	Ag8G00324

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.95	173,043.30 Da	52.09	87.93	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13980	STKc_Vps15	16	303	4.22085E-160	-
Pfam	PF02985	HEAT repeat	538	566	9.1E-4	IPR000357
Pfam	PF00400	WD domain, G-beta repeat	1127	1163	1.6E-6	IPR001680
Pfam	PF00069	Protein kinase domain	29	293	2.3E-21	IPR000719
SUPERFAMILY	SSF48371	ARM repeat	441	836	9.6E-34	IPR016024
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	26	326	8.88E-37	IPR011009
SUPERFAMILY	SSF50978	WD40 repeat-like	1125	1550	5.95E-32	IPR036322
Gene3D	G3DSA:2.130.10.10	-	1226	1550	2.6E-16	IPR015943
Gene3D	G3DSA:1.25.10.10	-	484	625	9.4E-11	IPR011989
Gene3D	G3DSA:2.130.10.10	-	1112	1225	1.0E-11	IPR015943
Gene3D	G3DSA:1.25.10.10	-	626	851	2.5E-16	IPR011989
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	23	340	1.5E-30	-
SMART	SM00320	WD40_4	1510	1550	0.45	IPR001680
SMART	SM00320	WD40_4	1174	1211	50.0	IPR001680
SMART	SM00320	WD40_4	1124	1163	4.2E-9	IPR001680
SMART	SM00320	WD40_4	1277	1315	0.13	IPR001680
SMART	SM00220	serkin_6	27	295	2.6E-12	IPR000719
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1517	1550	9.873505	IPR001680
ProSiteProfiles	PS50011	Protein kinase domain profile.	27	307	22.025732	IPR000719
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1131	1163	12.314676	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1131	1163	14.919653	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	1517	1550	9.651964	-
ProSiteProfiles	PS50077	HEAT repeat profile.	538	570	8.6064	IPR021133
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	145	157	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08333 (phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1])

Pathway:

ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G29380.1	protein kinase family protein / WD-40 repeat family protein.
RefSeq	XP_017222808.1	PREDICTED: phosphoinositide 3-kinase regulatory subunit 4 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M0E5	Serine/threonine-protein kinase VPS15 OS=Arabidopsis thaliana OX=3702 GN=VPS15 PE=1 SV=1
TrEMBL	A0A175YK28	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028653 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	14.517847	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.072252	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.199713	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.538687	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.731415	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.036653	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.334668	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	11.801749	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.303365	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	13.378975	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	15.106577	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.545303	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.414066	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.822491	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.183253	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.118671	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.543882	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.240943	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.966843	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	6.774741	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.899962	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.934243	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.125979	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.349206	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.625722	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.43863	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	5.96329	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.650881	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.340963	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.64659		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.529353		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.783266		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.835663		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.000311		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.692051		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.407381		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.527685		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.192376		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.34862	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.674667	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.704592	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.590262	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.73286	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.261817	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	13.81703	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	10.558887	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.849616	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.954426	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.229268	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.771981	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg31661
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9125
Amaranthaceae	Atriplex hortensis	1	Ah014666
Amaranthaceae	Beta vulgaris	1	BVRB_8g197640
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25085, Sbi_jg8931
Amaranthaceae	Salicornia europaea	1	Seu_jg19665
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007712, GOSA_00014470
Amaranthaceae	Suaeda glauca	3	Sgl42324, Sgl42361, Sgl47098
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010407, gene:ENSEOMG00000032907 ... gene:ENSEOMG00000047200
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5AG0016740, CQ.Regalona.r1.8AG0019210 ... CQ.Regalona.r1.8BG0023190
Anacardiaceae	Pistacia vera	1	pistato.v30257460
Apiaceae	Apium graveolens	5	Ag5G01593, Ag5G01594, Ag5G01595, Ag5G01596, Ag8G00324
Arecaceae	Cocos nucifera	1	COCNU_01G005400
Arecaceae	Phoenix dactylifera	1	gene-LOC103724252
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.775.V1.1
Asteraceae	Flaveria trinervia	1	Ftri14G10793
Brassicaceae	Arabidopsis thaliana	1	AT4G29380.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10024212m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g27250.v2.2
Brassicaceae	Brassica nigra	1	BniB05g008240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1569
Casuarinaceae	Casuarina glauca	1	Cgl06G1628
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g19760
Dunaliellaceae	Dunaliella salina	3	Dusal.0353s00010.v1.0, Dusal.0353s00013.v1.0 ... Dusal.0353s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g02000
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1291, evm.TU.LG07.1165
Plantaginaceae	Plantago ovata	1	Pov_00039668
Plumbaginaceae	Limonium bicolor	3	Lb5G26415, Lb5G26416, Lb5G26417
Poaceae	Echinochloa crus-galli	3	AH07.3788, BH07.3608, CH07.3684
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0149040, gene-QOZ80_2BG0205210
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0624570.1
Poaceae	Oryza coarctata	2	Oco03G024280, Oco04G024740
Poaceae	Oryza sativa	1	LOC_Os02g55340.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G188700, gene-BS78_04G166200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0206297
Poaceae	Sporobolus alterniflorus	2	Chr09G017650, Chr13G001830
Poaceae	Thinopyrum elongatum	1	Tel6E01G640500
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG053930, gene_TRIDC6BG062800
Poaceae	Triticum aestivum	3	TraesCS6A02G360100.2, TraesCS6B02G393000.1 ... TraesCS6D02G343100.1
Poaceae	Zea mays	2	Zm00001eb192340_P002, Zm00001eb257890_P001
Poaceae	Zoysia japonica	1	nbis-gene-8425
Poaceae	Zoysia macrostachya	1	Zma_g14626
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2791, evm.TU.LG03.2042, evm.TU.LG14.343 ... evm.TU.LG23.996
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g02510
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_4_RagTag.1891
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25694
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-15219
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4667
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1078
Rhizophoraceae	Kandelia obovata	1	Maker00001255
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-14804
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-1178
Salicaceae	Populus euphratica	1	populus_peu09190
Solanaceae	Lycium barbarum	1	gene-LOC132613469
Solanaceae	Solanum chilense	1	SOLCI005936100
Solanaceae	Solanum pennellii	1	gene-LOC107017746
Tamaricaceae	Reaumuria soongarica	1	gene_8037
Tamaricaceae	Tamarix chinensis	2	TC10G1503, TC12G1319
Zosteraceae	Zostera marina	2	Zosma01g16780.v3.1, Zosma04g25780.v3.1