Basic Information
Locus ID:
Ag8G00306
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 9394166 | 9394843 | + | Ag8G00306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 24,826.85 Da | 40.41 | 106.09 | 0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017222641.1 | PREDICTED: F-box/LRR-repeat protein At4g29420 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B7BTK3 | Putative F-box/RNI-like superfamily protein OS=Davidia involucrata OX=16924 GN=Din_039844 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.416412 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.984559 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.502458 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.235077 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.69306 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.454466 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.083601 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.953487 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.348302 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.678417 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.168121 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.593054 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.370919 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.255887 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.379337 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.934659 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.93059 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.506683 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.022131 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.53536 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.375115 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.593816 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.048664 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.558919 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.779198 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.512551 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.226026 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.719053 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.059222 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.737896 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.920251 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.843527 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.616292 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.531728 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.80569 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.233141 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.3178 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.009912 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.111958 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.987672 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.864642 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.305897 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.408358 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.594047 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.473166 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.393991 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.617953 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.455025 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.184959 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.039916 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32946 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11064 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015459 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011162 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42919, Sgl42920, Sgl47711, Sgl47712 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000033221, gene:ENSEOMG00000044927 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0015280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257800 |
| Apiaceae | Apium graveolens | 2 | Ag8G00305, Ag8G00306 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G014840 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702010 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2121.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G06069, Ftri7G05166 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025196m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0898 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0929 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g14830 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003389, Pov_00023080, Pov_00029699 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17036, Lb3G17040 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.320, BH02.349, BH06.2888, CH01.639 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0013050, gene-QOZ80_1BG0061740 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0236350.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_050142, gene-QYE76_050680, gene-QYE76_050681 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G004060, Oco02G004090 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g09740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G031500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205303, Pt_Chr0700275 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G020930, Chr05G011710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G184800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG013070, gene_TRIDC3BG017540 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G106200.1, TraesCS3A02G106300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb121140_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13326 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7798 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g05880 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1860 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25723 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5097 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4643 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1058 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001179 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1153 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8051 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1554 |