Basic Information
Locus ID:
Ag8G00267
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6127563 | 6133778 | - | Ag8G00267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 39,159.19 Da | 45.94 | 90.34 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06623 | PKc_MAPKK_plant_like | 68 | 334 | 5.62664E-156 | - |
| Pfam | PF00069 | Protein kinase domain | 72 | 330 | 1.9E-69 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 68 | 333 | 1.35E-82 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 44 | 149 | 5.1E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 150 | 349 | 3.1E-64 | - |
| SMART | SM00220 | serkin_6 | 70 | 330 | 2.6E-87 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 70 | 330 | 46.97224 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 76 | 99 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 188 | 200 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29810.1 | MAP kinase kinase 2. encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2. | 0 |
| RefSeq | XP_017223072.1 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Daucus carota subsp. sativus] | 0 |
| A0A1S4CGX4 | Mitogen-activated protein kinase kinase SIPKK OS=Nicotiana tabacum OX=4097 GN=SIPKK PE=1 SV=1 | 0 | |
| TrEMBL | Q6QMT5 | Mitogen-activated protein kinase kinase 2 OS=Petroselinum crispum OX=4043 GN=MKK2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 51.107723 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 52.250866 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 55.565723 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 57.692326 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 58.999035 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 59.686237 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 44.660355 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 44.688488 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 79.15049 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.448463 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 81.903519 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 67.483765 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 77.942917 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 67.721024 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 69.574066 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 68.403542 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 66.748344 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 103.916153 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 69.32106 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 158.182617 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 171.554565 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 84.653481 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 87.301735 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 87.451187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 75.408562 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 72.900215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 61.655933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 67.788963 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 64.177757 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 58.489723 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 39.807251 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 38.835186 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 194.990189 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 141.200378 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 251.49968 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 155.072983 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 141.824677 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 155.541428 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 71.034737 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 96.063942 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 45.547157 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 519.40863 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 211.320847 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 148.81041 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 136.937241 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 507.386078 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 130.252396 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 85.583458 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 78.519859 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 79.641205 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15466, jg31736, jg32898 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_11012, gene_20263, gene_9128 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014671, Ah015217 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197680 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24606, Sbi_jg25090, Sbi_jg8465, Sbi_jg8935 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19661, Seu_jg20125 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007709, GOSA_00014721 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42327, Sgl42365, Sgl42890, Sgl47105, Sgl47682 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000008912, gene:ENSEOMG00000032709 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0015050, CQ.Regalona.r1.8AG0019160 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30101160, pistato.v30257500, pistato.v30259710 |
| Apiaceae | Apium graveolens | 2 | Ag10G01498, Ag8G00267 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G004630, COCNU_14G003050, scaffold001333G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103711214, gene-LOC103714344, gene-LOC103720812 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.243.V1.1, AsparagusV1_06.835.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G18858, Ftri8G12609 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G26070.2, AT4G29810.2, AT5G56580.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013956m.g.v1.0, Thhalv10025480m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g18360.v2.2, Sp7g24080.v2.2, Sp7g27620.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g035590.2N, BniB02g082260.2N, BniB05g007900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0825, Ceq06G1572 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0849, Cgl06G1631 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g10150, gene.Cymno01g12740 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0024s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g01380, gene.Thate06g15760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-175 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1168, evm.TU.LG07.1271 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003434, Pov_00004087, Pov_00039602 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37148, Lb3G16941, Lb7G34232, Lb7G34243 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.3013, AH06.245, BH02.3104, CH02.3419, CH06.340 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0031520, gene-QOZ80_1BG0081640 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0408170.1, HORVU.MOREX.r3.7HG0650300.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_027869, gene-QYE76_070752 |
| Poaceae | Oryza coarctata | 4 | Oco01G011080, Oco11G002250, Oco12G002240, Oco21G003470 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g32660.1, LOC_Os06g05520.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_03G260300, gene-BS78_09G016300, gene-BS78_K316300 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402217, Pt_Chr0601959, Pt_Chr0604121 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G013590, Chr02G010900, Chr05G022710, Chr0G015680 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G521200, Tel6E01G175000, Tel7E01G199500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG055280, gene_TRIDC4AG057520 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G396700.2, TraesCS4A02G414600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb154530_P002, Zm00001eb377050_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18350, nbis-gene-26330 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11039, Zma_g27586, Zma_g31353 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2355, evm.TU.LG02.2787, evm.TU.LG05.1535 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19830, gene.Posoc03g23750 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60383.2, evm.TU.60384.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25697, nbisL1-mrna-25765 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12788, nbisL1-mrna-19076, nbisL1-mrna-20187 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16930, nbisL1-mrna-4606, nbisL1-mrna-4664 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.1022, evm.TU.utg000008l.1076 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000139, Maker00001006, Maker00014709 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-14806, nbisL1-mrna-14862, nbisL1-mrna-4003 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1108, nbisL1-mrna-1175, nbisL1-mrna-8163 |
| Salicaceae | Populus euphratica | 5 | populus_peu05006, populus_peu05071, populus_peu05072 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132633142, gene-LOC132633281, gene-LOC132636897 |
| Solanaceae | Solanum chilense | 2 | SOLCI000531800, SOLCI004334900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007412, gene-LOC107012802 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.17970_chr09_-, gene_8038 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G1509, TC10G1808 |
| Zosteraceae | Zostera marina | 2 | Zosma05g24860.v3.1, Zosma06g00660.v3.1 |