Basic Information
Locus ID:
Ag8G00262
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Lycopene epsilon cyclase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6022752 | 6028007 | + | Ag8G00262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 59,434.17 Da | 50.27 | 91.21 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05834 | Lycopene cyclase protein | 109 | 506 | 1.0E-154 | - |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 108 | 503 | 1.62E-24 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 104 | 463 | 3.1E-17 | IPR036188 |
| TIGRFAM | TIGR01790 | carotene-cycl: lycopene cyclase family protein | 109 | 509 | 3.2E-146 | IPR010108 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57030.1 | Lycopene beta/epsilon cyclase protein. Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase | 0 |
| RefSeq | NP_001316092.1 | lycopene epsilon cyclase, chloroplastic [Daucus carota subsp. sativus] | 0 |
| O65837 | Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CRTL-E-1 PE=2 SV=1 | 0 | |
| TrEMBL | Q2VEX5 | Putative lycopene epsilon cyclase OS=Daucus carota subsp. sativus OX=79200 GN=LCYE PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.137639 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.234642 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.898401 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.162601 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.822368 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.620658 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.322617 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.329851 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 59.161705 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 60.02475 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 61.770252 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 54.016781 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 54.070915 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.165951 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.267851 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 43.571316 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 33.266682 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 87.284935 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 107.633003 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 69.385185 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 66.164215 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.634825 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.675621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.107239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.98613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 86.553497 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 82.303246 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 98.359726 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 85.24234 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 76.662674 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 139.599579 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 133.075333 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 39.991135 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.303673 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 39.132507 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 52.085052 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 46.232555 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 40.923615 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 197.837494 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 188.358398 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 152.621323 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.37009 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.232658 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.63903 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.178461 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.479677 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.034411 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.708488 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.84227 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.875462 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31730 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9353 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015194 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24602, Sbi_jg8459, Sbi_jg8461 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13409, Seu_jg28725 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014731 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42897, Sgl47689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011696, gene:ENSEOMG00000032821 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0014930, CQ.Regalona.r1.8BG0016280 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30259630 |
| Apiaceae | Apium graveolens | 1 | Ag8G00262 |
| Arecaceae | Cocos nucifera | 1 | scaffold011582G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723715 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2962.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12895 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013234m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g18740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g036220.2N, BniB08g014050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0832 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0858 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01010 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0472s00012.v1.0, Dusal.0598s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1264 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004091 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16948 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2127, BH02.2198, CH02.2350 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0021950, gene-QOZ80_1BG0071910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0267830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053469 |
| Poaceae | Oryza coarctata | 2 | Oco01G013230, Oco02G013380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g39960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G173800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603119, Pt_Chr0603126 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G009600, Chr05G017030, Chr08G009950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G362900 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G208800.1, TraesCS3B02G239100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb357090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29416 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8113 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2348, evm.TU.LG23.581 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1816 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25761 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20185 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4608 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1024 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000239 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14860 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1113 |
| Salicaceae | Populus euphratica | 1 | populus_peu11913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636893 |
| Solanaceae | Solanum chilense | 1 | SOLCI004414300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007293 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17640 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1794 |
| Zosteraceae | Zostera marina | 1 | Zosma01g03320.v3.1 |