halophFGD

Basic Information

Locus ID: Ag8G00235

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: inactive protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	5206174	5212143	+	Ag8G00235

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.36	74,957.67 Da	47.83	83.44	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	395	660	8.35562E-93	-
Pfam	PF00069	Protein kinase domain	393	655	5.0E-40	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	369	659	5.06E-76	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	360	464	1.7E-32	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	466	665	2.8E-58	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	389	664	33.46014	IPR000719
ProSitePatterns	PS00109	Tyrosine protein kinases specific active-site signature.	509	521	-	IPR008266
MobiDBLite	mobidb-lite	consensus disorder prediction	266	283	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	252	283	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain.
RefSeq	XP_017228824.1	PREDICTED: inactive protein kinase SELMODRAFT_444075-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	P0DH62	Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_444075 PE=2 SV=1
TrEMBL	A0A175YAQ0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_032245 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.54379	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.570487	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.792907	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.183797	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.21136	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.610972	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.17946	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.057815	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.716663	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.766796	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	25.222931	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	19.738001	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	17.208393	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.475595	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.077744	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.55208	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	8.432921	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	22.201704	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.965488	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.821235	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.657262	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.764138	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.496017	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.034218	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.676832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.605479	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.1081	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.263708	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	13.64601	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.188172		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.537008		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.405469		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.496094		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.343293		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.335869		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.764346		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.106637		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.172108		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.360109	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.459141	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.359395	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.988974	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	11.842072	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.053658	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	13.708769	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.322216	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.323713	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.828611	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.645607	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.352623	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13577, jg18070, jg25254, jg32939
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5653
Amaranthaceae	Atriplex hortensis	2	Ah015607, Ah028906
Amaranthaceae	Beta vulgaris	2	BVRB_7g176600, BVRB_8g189910
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25267, Sbi_jg27004, Sbi_jg33548, Sbi_jg9119
Amaranthaceae	Salicornia europaea	2	Seu_jg19476, Seu_jg8249
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002930, GOSA_00011228
Amaranthaceae	Suaeda glauca	4	Sgl43080, Sgl47892, Sgl73263, Sgl76782
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006263, gene:ENSEOMG00000011197 ... gene:ENSEOMG00000031537, gene:ENSEOMG00000037107, gene:ENSEOMG00000037775, gene:ENSEOMG00000046896
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0000460, CQ.Regalona.r1.8AG0013400 ... CQ.Regalona.r1.8BG0014230, CQ.Regalona.r1.9BG0005320
Anacardiaceae	Pistacia vera	1	pistato.v30116480
Apiaceae	Apium graveolens	3	Ag4G00183, Ag5G00897, Ag8G00235
Arecaceae	Cocos nucifera	3	COCNU_06G004850, COCNU_14G003180, scaffold016103G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103707475, gene-LOC103711197, gene-LOC103721815 ... gene-LOC103722811
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2924.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G07448, Ftri4G10591, Ftri4G29907, Ftri4G30698 ... Ftri8G01282
Brassicaceae	Arabidopsis thaliana	3	AT1G55200.1, AT3G13690.1, AT5G56790.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10011319m.g.v1.0, Thhalv10012884m.g.v1.0 ... Thhalv10020139m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g40880.v2.2, Sp3g11890.v2.2, Sp6g18530.v2.2
Brassicaceae	Brassica nigra	7	BniB01g051510.2N, BniB02g035800.2N, BniB05g036390.2N ... BniB07g001370.2N, BniB07g027290.2N, BniB07g055420.2N, BniB07g055470.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0887, Ceq06G0875
Casuarinaceae	Casuarina glauca	2	Cgl02G0898, Cgl06G0902
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g13220, gene.Cymno12g02810
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g13370, gene.Thate07g17230, gene.Thate09g07280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-795
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.28, evm.TU.LG07.1215
Plantaginaceae	Plantago ovata	2	Pov_00002905, Pov_00025801
Plumbaginaceae	Limonium bicolor	2	Lb3G18709, Lb3G18728
Poaceae	Echinochloa crus-galli	6	AH02.2242, BH02.2342, BH05.1187, CH01.2675, CH02.2517 ... CH05.1523
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0023500, gene-QOZ80_1BG0074020 ... gene-QOZ80_5AG0361200
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094010.1, HORVU.MOREX.r3.3HG0270050.1
Poaceae	Lolium multiflorum	3	gene-QYE76_015089, gene-QYE76_053628, gene-QYE76_053697
Poaceae	Oryza coarctata	4	Oco01G014020, Oco02G014250, Oco09G018230, Oco10G018180
Poaceae	Oryza sativa	2	LOC_Os01g41870.2, LOC_Os05g51190.2
Poaceae	Paspalum vaginatum	3	gene-BS78_03G186200, gene-BS78_09G256900, gene-BS78_K137000
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0505832, Pt_Chr0603241, Pt_Chr0605176
Poaceae	Sporobolus alterniflorus	6	Chr02G016160, Chr03G010490, Chr05G017720, Chr08G010670 ... Chr18G016000, Chr22G000070
Poaceae	Thinopyrum elongatum	2	Tel1E01G731200, Tel3E01G373700
Poaceae	Triticum dicoccoides	3	gene_TRIDC1AG063570, gene_TRIDC3AG032260 ... gene_TRIDC3BG036740
Poaceae	Triticum aestivum	5	TraesCS1A02G433100.1, TraesCS1B02G468900.1 ... TraesCS3A02G216100.1, TraesCS3B02G245800.1, TraesCS3D02G217700.1
Poaceae	Zea mays	3	Zm00001eb161420_P002, Zm00001eb297420_P001 ... Zm00001eb357760_P001
Poaceae	Zoysia japonica	3	nbis-gene-24711, nbis-gene-29320, nbis-gene-29579
Poaceae	Zoysia macrostachya	3	Zma_g10611, Zma_g28914, Zma_g8171
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.1888, evm.TU.LG14.174, evm.TU.LG19.346 ... evm.TU.LG24.201
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g28130, gene.Posoc08g12070, gene.Posoc09g06210
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.1348 ... evm.TU.Scaffold_4_RagTag.1850
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-25733, nbisL1-mrna-27678, nbisL1-mrna-27754 ... nbisL1-mrna-7077
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-5088, nbisL1-mrna-8076
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-23079, nbisL1-mrna-4634, nbisL1-mrna-8772
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000004l.68, evm.TU.utg000008l.1050
Rhizophoraceae	Kandelia obovata	2	Maker00001406, Maker00003898
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14833, nbisL1-mrna-16448
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1144, nbisL1-mrna-17922
Salicaceae	Populus euphratica	4	populus_peu02627, populus_peu11937, populus_peu33516 ... populus_peu33517
Solanaceae	Lycium barbarum	3	gene-LOC132603712, gene-LOC132616663, gene-LOC132633454
Solanaceae	Solanum chilense	2	SOLCI001722600, SOLCI005557900
Solanaceae	Solanum pennellii	3	gene-LOC107007429, gene-LOC107014965, gene-LOC107026029
Tamaricaceae	Reaumuria soongarica	2	gene_10834, gene_3236
Tamaricaceae	Tamarix chinensis	2	TC08G1698, TC10G1720
Zosteraceae	Zostera marina	2	Zosma01g07410.v3.1, Zosma05g04320.v3.1