halophFGD

Basic Information

Locus ID: Ag8G00230

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	4745248	4747930	+	Ag8G00230

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.64	30,558.39 Da	43.62	73.98	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	38	269	7.8E-79	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	161	262	4.81E-20	-
Gene3D	G3DSA:3.10.20.90	-	156	274	8.1E-41	-
ProSiteProfiles	PS51745	PB1 domain profile.	161	263	23.491123	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G29080.1	phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2)
RefSeq	XP_017220390.1	PREDICTED: auxin-responsive protein IAA27-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZSY8	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1
TrEMBL	A0A175YKW4	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028688 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.325814	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.772566	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.379393	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.498678	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.264663	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.245183	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.189693	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.403633	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	32.219563	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	37.533119	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	42.362267	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	38.957714	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.977797	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	28.244909	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.06472	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	14.387341	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	23.614906	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.066171	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.047846	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.149833	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.688385	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.857645	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.022144	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.739573	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.791113	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	16.545166	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.252849	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.197674	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.597059	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.326685		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.555318		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.977627		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.090837		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.417893		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.192279		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.177825		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.347598		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.085078	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.024644	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.142222	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.152054	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.24677	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.969328	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	24.003902	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.300985	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.340811	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.494791	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg18133, jg19602, jg25321, jg30757, jg39876
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10727, gene_21314, gene_23662
Amaranthaceae	Atriplex hortensis	4	Ah002364, Ah010889, Ah012984, Ah014582
Amaranthaceae	Beta vulgaris	3	BVRB_6g152930, BVRB_8g196860, BVRB_9g221270
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11365, Sbi_jg25012, Sbi_jg43022, Sbi_jg45624 ... Sbi_jg46319, Sbi_jg8866
Amaranthaceae	Salicornia europaea	3	Seu_jg11469, Seu_jg19738, Seu_jg20647
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002058, GOSA_00005327, GOSA_00007773
Amaranthaceae	Suaeda glauca	8	Sgl35715, Sgl41030, Sgl42253, Sgl47029, Sgl53416, Sgl55810 ... Sgl58682, Sgl61019
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000001205, gene:ENSEOMG00000008979 ... gene:ENSEOMG00000015656, gene:ENSEOMG00000018667, gene:ENSEOMG00000026643, gene:ENSEOMG00000034305, gene:ENSEOMG00000038377, gene:ENSEOMG00000047145, gene:ENSEOMG00000052437
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.6AG0000240, CQ.Regalona.r1.6BG0000130 ... CQ.Regalona.r1.7BG0011670, CQ.Regalona.r1.8AG0019830, CQ.Regalona.r1.8BG0022560
Anacardiaceae	Pistacia vera	5	pistato.v30042400, pistato.v30124190, pistato.v30124900 ... pistato.v30204260, pistato.v30256820
Apiaceae	Apium graveolens	7	Ag10G01523, Ag4G00154, Ag4G01188, Ag6G01444, Ag8G00230 ... Ag9G01116, AgUnG01323
Arecaceae	Cocos nucifera	4	COCNU_02G003860, COCNU_03G011800, COCNU_14G003610 ... scaffold023260G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103702546, gene-LOC103706840, gene-LOC103709490 ... gene-LOC103716613
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.459.V1.1, AsparagusV1_05.1898.V1.1
Asteraceae	Flaveria trinervia	9	Ftri13G12981, Ftri14G00199, Ftri15G16890, Ftri18G12429 ... Ftri18G24814, Ftri1G31643, Ftri3G11414, Ftri7G05048, Ftri8G12102
Brassicaceae	Arabidopsis thaliana	3	AT2G22670.4, AT4G29080.1, AT5G65670.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000236m.g.v1.0, Thhalv10004532m.g.v1.0 ... Thhalv10025542m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g28750.v2.2, Sp4g01690.v2.2, Sp7g27020.v2.2
Brassicaceae	Brassica nigra	6	BniB01g021330.2N, BniB03g011460.2N, BniB04g000680.2N ... BniB05g008450.2N, BniB06g013950.2N, BniB07g043370.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G1029, Ceq05G0316, Ceq06G0402, Ceq06G1520
Casuarinaceae	Casuarina glauca	4	Cgl03G1114, Cgl05G0335, Cgl06G0417, Cgl06G1578
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12310, gene.Cymno07g05240, gene.Cymno12g02610
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g25200, gene.Thate04g20560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10596, nbisL1-mrna-3239, nbisL1-mrna-4377 ... nbisL1-mrna-768
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.318, evm.TU.LG02.2645, evm.TU.LG06.266
Plantaginaceae	Plantago ovata	2	Pov_00023258, Pov_00025698
Plumbaginaceae	Limonium bicolor	3	Lb1G05999, Lb1G06005, Lb5G26446
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1BG0049300
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0249060.1
Poaceae	Lolium multiflorum	3	gene-QYE76_017236, gene-QYE76_033899, gene-QYE76_051569
Poaceae	Oryza coarctata	2	Oco10G004890, Oco11G009790
Poaceae	Paspalum vaginatum	1	gene-BS78_10G145100
Poaceae	Puccinellia tenuiflora	1	Pt_Ctg00027
Poaceae	Sporobolus alterniflorus	2	Chr14G011510, Chr21G016240
Poaceae	Zea mays	1	Zm00001eb284310_P002
Poaceae	Zoysia japonica	1	nbis-gene-17920
Portulacaceae	Portulaca oleracea	5	evm.TU.LG07.970, evm.TU.LG08.1637, evm.TU.LG12.1720 ... evm.TU.LG15.890, evm.TU.LG22.536
Posidoniaceae	Posidonia oceanica	9	gene.Posoc02g10760, gene.Posoc02g16660, gene.Posoc02g18880 ... gene.Posoc04g09970, gene.Posoc04g09980, gene.Posoc05g19100, gene.Posoc07g11800, gene.Posoc08g13080, gene.Posoc09g07380
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.57324.2, evm.TU.57325.2, evm.TU.Scaffold_7_RagTag.885 ... evm.TU.Scaffold_18_RagTag.557, evm.TU.Scaffold_4_RagTag.1928, evm.TU.Scaffold_6_RagTag.1734, evm.TU.Scaffold_8_RagTag.847
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-19348, nbisL1-mrna-27935, nbisL1-mrna-27953 ... nbisL1-mrna-818, nbisL1-mrna-9390
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-11579, nbisL1-mrna-1309, nbisL1-mrna-16303 ... nbisL1-mrna-17067, nbisL1-mrna-17635, nbisL1-mrna-3484, nbisL1-mrna-6952
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-12033, nbisL1-mrna-20577, nbisL1-mrna-2409 ... nbisL1-mrna-4698, nbisL1-mrna-6714, nbisL1-mrna-7970, nbisL1-mrna-8828
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000002l.682, evm.TU.utg000008l.1101 ... evm.TU.utg000011l.1056, evm.TU.utg000018l.238, evm.TU.utg000019l.547, evm.TU.utg000023l.123, evm.TU.utg000033l.556
Rhizophoraceae	Kandelia obovata	7	Maker00001192, Maker00002346, Maker00002870, Maker00007445 ... Maker00010768, Maker00015163, Maker00019097
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-11484, nbisL1-mrna-13081, nbisL1-mrna-14782 ... nbisL1-mrna-15412, nbisL1-mrna-16404, nbisL1-mrna-6168, nbisL1-mrna-7365
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10133, nbisL1-mrna-1212, nbisL1-mrna-17069 ... nbisL1-mrna-17980, nbisL1-mrna-1848, nbisL1-mrna-21320, nbisL1-mrna-3351
Salicaceae	Populus euphratica	3	populus_peu02716, populus_peu32158, populus_peu33622
Solanaceae	Lycium barbarum	5	gene-LOC132603692, gene-LOC132604040, gene-LOC132627675 ... gene-LOC132633374, gene-LOC132636804
Solanaceae	Solanum chilense	3	SOLCI002323600, SOLCI003422200, SOLCI004345900
Solanaceae	Solanum pennellii	2	gene-LOC107005226, gene-LOC107012302
Tamaricaceae	Reaumuria soongarica	4	STRG.8866_chr03_-, gene_15590, gene_1813, gene_8019
Tamaricaceae	Tamarix chinensis	4	TC04G2788, TC09G0281, TC10G1441, TC11G0618
Zosteraceae	Zostera marina	2	Zosma01g06190.v3.1, Zosma05g13460.v3.1