Basic Information
Locus ID:
Ag8G00209
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Myb-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4441993 | 4448692 | + | Ag8G00209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 126,867.63 Da | 52.33 | 80.98 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00167 | SANT | 564 | 603 | 4.70057E-11 | IPR001005 |
| CDD | cd00167 | SANT | 511 | 555 | 1.91803E-7 | IPR001005 |
| CDD | cd00167 | SANT | 457 | 502 | 7.15798E-11 | IPR001005 |
| Pfam | PF13921 | Myb-like DNA-binding domain | 458 | 520 | 1.3E-12 | - |
| Pfam | PF00249 | Myb-like DNA-binding domain | 405 | 447 | 1.4E-6 | IPR017930 |
| Pfam | PF00773 | RNB domain | 905 | 1060 | 2.7E-25 | IPR001900 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 564 | 603 | 4.2E-13 | IPR017930 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 895 | 1055 | 4.45E-31 | IPR012340 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 379 | 447 | 6.12E-14 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 506 | 602 | 1.44E-25 | IPR009057 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 431 | 506 | 1.17E-18 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 402 | 450 | 5.7E-10 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 298 | 401 | 1.4E-6 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 509 | 560 | 3.9E-16 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 563 | 607 | 1.3E-14 | - |
| Gene3D | G3DSA:1.10.10.60 | - | 453 | 508 | 1.8E-16 | - |
| SMART | SM00717 | sant | 305 | 398 | 1.8E-4 | IPR001005 |
| SMART | SM00717 | sant | 560 | 608 | 7.3E-13 | IPR001005 |
| SMART | SM00717 | sant | 508 | 557 | 2.0E-9 | IPR001005 |
| SMART | SM00717 | sant | 454 | 504 | 1.5E-13 | IPR001005 |
| SMART | SM00955 | RNB_2 | 905 | 1108 | 3.2E-9 | IPR001900 |
| SMART | SM00717 | sant | 401 | 451 | 2.1E-5 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 556 | 606 | 9.988072 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 450 | 506 | 20.272923 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 301 | 396 | 6.945622 | IPR001005 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 564 | 610 | 16.398376 | IPR017930 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 507 | 559 | 17.955242 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 450 | 502 | 11.230598 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 397 | 449 | 8.1417 | IPR001005 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 504 | 555 | 10.069359 | IPR001005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 161 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18100.2 | myb domain protein 4r1. Member of the R2R3 transcription factor gene family. | 0 |
| RefSeq | XP_017223494.1 | PREDICTED: uncharacterized protein LOC108199972 [Daucus carota subsp. sativus] | 0 |
| Q6NQJ6 | Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RNR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YJG8 | Myb-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028712 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.864457 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.695525 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.254181 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.337195 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.602536 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.507144 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.278686 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.550768 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.734312 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.908319 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.565042 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.230854 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.081439 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.112504 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.71791 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.115721 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.70698 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.515764 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.159972 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.166611 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.589032 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.740132 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.372874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.947796 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.177441 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.997262 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.314192 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.012852 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.624521 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.120949 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.879469 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.523663 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.345223 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.765206 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.801872 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.234282 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.231454 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.283941 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.328496 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.122124 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.826942 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.649217 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.741005 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.754742 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.896536 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.363137 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.665092 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.976438 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.199219 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.532413 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27001 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002632 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2569, Sbi_jg60033, Sbi_jg60034, Sbi_jg60036 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24227 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00013051, GOSA_00013052, GOSA_00015253, GOSA_00015254 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78417, Sgl80926 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006359, gene:ENSEOMG00000006551 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012960, CQ.Regalona.r1.5BG0013480 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150230, pistato.v30150250, pistato.v30150280 |
| Apiaceae | Apium graveolens | 2 | Ag11G03846, Ag8G00209 |
| Arecaceae | Cocos nucifera | 4 | COCNU_14G008150, COCNU_14G008160, COCNU_14G008940 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709816, gene-LOC103721351 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.610.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G23282 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020020m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g16220.v2.2, Sp7g18220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g046510.2N, BniB05g016770.2N, BniB05g016780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2864 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3012 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0179s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07960 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.266, evm.TU.LG10.267 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033246, Pov_00040236 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15388 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.189, BH03.245, CH03.308 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0555170, gene-QOZ80_7BG0586270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0494820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042445 |
| Poaceae | Oryza coarctata | 2 | Oco13G001170, Oco14G001220 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g04700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G030500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200610 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001690, Chr28G000760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G465700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG071500, gene_TRIDC5AG043630 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G503500.1, TraesCS5A02G291400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb299750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13142, nbis-gene-51773 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5948 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2250, evm.TU.LG14.1423, evm.TU.LG20.1497 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19370, gene.Posoc06g21230 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60404.6, evm.TU.Scaffold_11_RagTag.643 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14299, nbisL1-mrna-28887 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4298 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12333 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008890 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-947 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8390 |
| Salicaceae | Populus euphratica | 1 | populus_peu28284 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633236 |
| Solanaceae | Solanum chilense | 1 | SOLCI000443000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015451 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17963, gene_3668 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1701 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32260.v3.1 |