halophFGD

Basic Information

Locus ID: Ag8G00135

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	3237373	3241531	-	Ag8G00135

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.48	55,108.78 Da	41.01	76.38	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	73	311	1.2E-25	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	36	322	8.54E-45	IPR011009
SUPERFAMILY	SSF48452	TPR-like	385	482	9.19E-12	IPR011990
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	137	329	4.8E-44	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	31	135	1.0E-30	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	386	492	4.4E-12	IPR011990
ProSiteProfiles	PS50011	Protein kinase domain profile.	60	326	21.3473	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K14500 (BR-signaling kinase [EC:2.7.11.1])

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain.
RefSeq	XP_017223559.1	PREDICTED: probable serine/threonine-protein kinase At5g41260 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FIL1	Serine/threonine-protein kinase BSK5 OS=Arabidopsis thaliana OX=3702 GN=BSK5 PE=1 SV=1
TrEMBL	A0A175YKW6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028797 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.496661	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.261783	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.316818	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.433393	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.188708	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	24.066757	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	22.654051	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	24.514706	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	26.106411	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.510415	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.758448	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	75.042114	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	96.594131	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	135.55394	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	171.517441	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	166.036133	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	142.399078	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	91.902962	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	68.381142	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	106.598785	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	84.719536	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	103.04834	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	143.785034	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	264.523193	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	110.277313	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	158.821167	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.548383		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.991384		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.830513		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.322594		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.514753		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.042885		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.258575		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.188845		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.675461	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.398958	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.263925	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.91699	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	16.041948	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	9.275688	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.28427	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.49789	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.547617	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	42.720753	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	33.214962	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	30.39916	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg23459, jg32524, jg3309, jg37116
Aizoaceae	Mesembryanthemum crystallinum	4	gene_1709, gene_1838, gene_2442, gene_5831
Amaranthaceae	Atriplex hortensis	3	Ah004641, Ah023037, Ah027934
Amaranthaceae	Beta vulgaris	2	BVRB_1g004840, BVRB_7g172980
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1664, Sbi_jg23844, Sbi_jg34884, Sbi_jg4477, Sbi_jg7674 ... Sbi_jg49383
Amaranthaceae	Salicornia europaea	3	Seu_jg12346, Seu_jg3081, Seu_jg5899
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000422, GOSA_00001210, GOSA_00003292
Amaranthaceae	Suaeda glauca	6	Sgl11108, Sgl16511, Sgl51981, Sgl57284, Sgl72879, Sgl76414
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006766, gene:ENSEOMG00000007660 ... gene:ENSEOMG00000015752, gene:ENSEOMG00000021092, gene:ENSEOMG00000022343, gene:ENSEOMG00000036508, gene:ENSEOMG00000037224, gene:ENSEOMG00000040026, gene:ENSEOMG00000046412
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.1AG0002710, CQ.Regalona.r1.1AG0020830 ... CQ.Regalona.r1.2BG0024670, CQ.Regalona.r1.5AG0007480, CQ.Regalona.r1.5BG0007760, CQ.Regalona.r1.7AG0003560, CQ.Regalona.r1.9BG0002150
Anacardiaceae	Pistacia vera	5	pistato.v30004340, pistato.v30010870, pistato.v30062120 ... pistato.v30137150, pistato.v30285130
Apiaceae	Apium graveolens	4	Ag10G00185, Ag10G01602, Ag8G00135, Ag9G02803
Arecaceae	Cocos nucifera	3	COCNU_08G010330, COCNU_09G007700, COCNU_12G008240
Arecaceae	Phoenix dactylifera	3	gene-LOC103698531, gene-LOC103705555, gene-LOC103715502
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.886.V1.1, AsparagusV1_08.3602.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G16213, Ftri11G32386, Ftri13G00920, Ftri14G28222 ... Ftri15G14050, Ftri5G05474, Ftri7G12100, Ftri7G31082
Brassicaceae	Arabidopsis thaliana	6	AT1G01740.1, AT1G63500.1, AT3G54030.1, AT4G00710.1 ... AT5G41260.1, AT5G59010.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10007855m.g.v1.0, Thhalv10010321m.g.v1.0 ... Thhalv10013377m.g.v1.0, Thhalv10023428m.g.v1.0, Thhalv10027736m.g.v1.0, Thhalv10028608m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g00560.v2.2, Sp2g01110.v2.2, Sp5g08360.v2.2 ... Sp6g00690.v2.2, Sp6g20710.v2.2
Brassicaceae	Brassica nigra	10	BniB02g002120.2N, BniB02g038620.2N, BniB02g058400.2N ... BniB03g036850.2N, BniB04g022140.2N, BniB04g024180.2N, BniB05g038400.2N, BniB06g065710.2N, BniB08g041660.2N, BniB08g042850.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0365, Ceq05G0121, Ceq08G1079, Ceq08G1968
Casuarinaceae	Casuarina glauca	4	Cgl03G0461, Cgl05G0129, Cgl08G1103, Cgl08G2045
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g09440, gene.Cymno03g05880, gene.Cymno04g18290 ... gene.Cymno05g19590
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g02730, gene.Thate06g00100, gene.Thate08g01290 ... gene.Thate08g13180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-506, nbisL1-mrna-6136, nbisL1-mrna-9504
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1098, evm.TU.LG04.880, evm.TU.LG09.1167 ... evm.TU.LG10.1378
Plantaginaceae	Plantago ovata	3	Pov_00002819, Pov_00003175, Pov_00017685
Plumbaginaceae	Limonium bicolor	7	Lb0G37152, Lb1G02227, Lb2G09244, Lb2G09261, Lb3G20494 ... Lb3G20686, Lb4G25121
Poaceae	Echinochloa crus-galli	6	AH01.435, AH09.2755, BH01.306, BH09.2999, CH01.145 ... CH07.1968
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0210100, gene-QOZ80_3BG0255250 ... gene-QOZ80_4AG0298880, gene-QOZ80_4BG0329590
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0214020.1, HORVU.MOREX.r3.5HG0527630.1 ... HORVU.MOREX.r3.7HG0707880.1
Poaceae	Lolium multiflorum	6	gene-QYE76_016985, gene-QYE76_033691, gene-QYE76_037247 ... gene-QYE76_047588, gene-QYE76_060611, gene-QYE76_060787
Poaceae	Oryza coarctata	3	Oco05G027710, Oco06G028670, Oco07G019650
Poaceae	Oryza sativa	2	LOC_Os03g61010.1, LOC_Os04g58750.3
Poaceae	Paspalum vaginatum	2	gene-BS78_01G026600, gene-BS78_06G289800
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105862, Pt_Chr0307052, Pt_Chr0402738, Pt_Chr0402766
Poaceae	Sporobolus alterniflorus	10	Chr01G001260, Chr02G011180, Chr02G016670, Chr04G031680 ... Chr07G030750, Chr12G032910, Chr23G000590, Chr25G000440, Chr26G018670, Chr30G000550
Poaceae	Thinopyrum elongatum	3	Tel2E01G983900, Tel5E01G773200, Tel7E01G562200
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG079270, gene_TRIDC2BG087590 ... gene_TRIDC5AG069360, gene_TRIDC5BG074930, gene_TRIDC7AG045920, gene_TRIDC7BG037910
Poaceae	Triticum aestivum	9	TraesCS2A02G582500.1, TraesCS2B02G604300.1 ... TraesCS2D02G597600.1, TraesCS5A02G487000.2, TraesCS5B02G500800.1, TraesCS5D02G501100.1, TraesCS7A02G328100.2, TraesCS7B02G228900.2, TraesCS7D02G324900.2
Poaceae	Zea mays	4	Zm00001eb063040_P002, Zm00001eb065720_P001 ... Zm00001eb211460_P001, Zm00001eb434080_P001
Poaceae	Zoysia japonica	1	nbis-gene-15540
Poaceae	Zoysia macrostachya	4	Zma_g141, Zma_g20717, Zma_g22261, Zma_g2461
Portulacaceae	Portulaca oleracea	8	evm.TU.LG04.2291, evm.TU.LG04.3384, evm.TU.LG06.19 ... evm.TU.LG16.214, evm.TU.LG19.919, evm.TU.LG19.984, evm.TU.LG24.921, evm.TU.LG24.988
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g40300, gene.Posoc02g14110, gene.Posoc07g15640
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.178, evm.TU.Scaffold_14_RagTag.192 ... evm.TU.Scaffold_1_RagTag.1744, evm.TU.Scaffold_5_RagTag.273
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10852, nbisL1-mrna-18201, nbisL1-mrna-22423 ... nbisL1-mrna-24621, nbisL1-mrna-5536
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11122, nbisL1-mrna-1436, nbisL1-mrna-15437 ... nbisL1-mrna-7019
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10523, nbisL1-mrna-19480, nbisL1-mrna-3755 ... nbisL1-mrna-8516
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.178, evm.TU.utg000007l.255 ... evm.TU.utg000016l.651, evm.TU.utg000027l.455
Rhizophoraceae	Kandelia obovata	4	Maker00013485, Maker00016942, Maker00018044, Maker00018588
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16048, nbisL1-mrna-5001, nbisL1-mrna-5534 ... nbisL1-mrna-9201
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10889, nbisL1-mrna-11701, nbisL1-mrna-13703 ... nbisL1-mrna-7026
Salicaceae	Populus euphratica	9	populus_peu02069, populus_peu03559, populus_peu11377 ... populus_peu25695, populus_peu25719, populus_peu27716, populus_peu31678, populus_peu34395, populus_peu35738
Solanaceae	Lycium barbarum	5	gene-LOC132604557, gene-LOC132605975, gene-LOC132607024 ... gene-LOC132630599, gene-LOC132643648
Solanaceae	Solanum chilense	5	SOLCI002409600, SOLCI003087200, SOLCI003459700 ... SOLCI004438900, SOLCI006562500
Solanaceae	Solanum pennellii	5	gene-LOC107004676, gene-LOC107007519, gene-LOC107021781 ... gene-LOC107029150, gene-LOC107031952
Tamaricaceae	Reaumuria soongarica	3	STRG.23475_chr05_-, STRG.3141_chr01_+, gene_1436
Tamaricaceae	Tamarix chinensis	5	TC02G1831, TC03G2450, TC06G0229, TC07G0359, TC11G0150
Zosteraceae	Zostera marina	3	Zosma01g41040.v3.1, Zosma04g23150.v3.1, Zosma06g29160.v3.1