halophFGD

Basic Information

Locus ID: Ag8G00130

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: FBP

Description: Belongs to the FBPase class 1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	3160463	3162937	-	Ag8G00130

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.08	44,272.54 Da	39.18	83.79	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00354	FBPase	76	405	0.0	IPR000146
Pfam	PF18913	Fructose-1-6-bisphosphatase, C-terminal domain	276	405	3.1E-51	IPR044015
Pfam	PF00316	Fructose-1-6-bisphosphatase, N-terminal domain	71	272	1.0E-54	IPR033391
SUPERFAMILY	SSF56655	Carbohydrate phosphatase	66	405	8.38E-112	-
Gene3D	G3DSA:3.40.190.80	-	274	405	1.4E-66	-
Gene3D	G3DSA:3.30.540.10	-	66	273	1.7E-85	-
PIRSF	PIRSF000904	FBPtase_SBPase	41	406	4.0E-112	IPR000146
PIRSF	PIRSF500210	FBPtase	50	406	2.0E-116	IPR028343
ProSitePatterns	PS00124	Fructose-1-6-bisphosphatase active site.	347	359	-	IPR020548
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	131	157	2.7E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	226	249	2.7E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	94	121	2.7E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	381	406	2.7E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	283	310	2.7E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	257	280	2.7E-63	IPR028343
Hamap	MF_01855	Fructose-1,6-bisphosphatase class 1 [fbp].	70	406	38.17878	IPR000146

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0016791 (phosphatase activity) GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity) GO:0042578 (phosphoric ester hydrolase activity)

KEGG Pathway

KO Term:

K03841 (fructose-1,6-bisphosphatase I [EC:3.1.3.11])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00030 (Pentose phosphate pathway) map00030 (Pentose phosphate pathway) ko00051 (Fructose and mannose metabolism) map00051 (Fructose and mannose metabolism) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway)

Module:

M00003 (Gluconeogenesis, oxaloacetate => fructose-6P) M00165 (Reductive pentose phosphate cycle (Calvin cycle)) M00344 (Formaldehyde assimilation, xylulose monophosphate pathway)

Reaction:

R00762 (D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate) R04780 (beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54050.1	high cyclic electron flow 1. Encodes HCEF1 (High Cyclic Electron Flow 1). Mutant phenotype: constitutively elevated electron flow (CEFI).
RefSeq	XP_017237533.1	PREDICTED: fructose-1,6-bisphosphatase, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	P25851	Fructose-1,6-bisphosphatase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFBP1 PE=1 SV=2
TrEMBL	A0A166ARF3	fructose-bisphosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010436 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.029065	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.773324	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.504788	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.46004	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.433745	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.125299	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.639924	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.014284	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	28.888786	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.329859	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	24.036209	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	75.124947	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	32.592396	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	30.879778	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	19.999924	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	33.987038	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	26.057222	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	80.20668	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	108.864799	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	55.997784	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	62.617809	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.267504	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.155101	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.212095	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	31.051476	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	89.996361	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	67.731606	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	87.850273	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	52.387856	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.676641		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	15.78377		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.806818		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.901554		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	47.718525		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	23.855482		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	36.864021		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	30.304552		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	25.358459		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	135.126938	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	153.814621	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	248.21051	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.403395	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	11.74276	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	13.9484	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.558524	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.830778	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	11.445139	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	21.234814	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.143182	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	13.969492	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg32146
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2435
Amaranthaceae	Atriplex hortensis	1	Ah010674
Amaranthaceae	Beta vulgaris	1	BVRB_5g111310
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31970, Sbi_jg57360
Amaranthaceae	Salicornia europaea	1	Seu_jg25078
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022177
Amaranthaceae	Suaeda glauca	4	Sgl54001, Sgl54019, Sgl59335, Sgl59361
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000007276, gene:ENSEOMG00000024121 ... gene:ENSEOMG00000025124
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0014090, CQ.Regalona.r1.5BG0015360
Anacardiaceae	Pistacia vera	1	pistato.v30285180
Apiaceae	Apium graveolens	3	Ag2G01890, Ag7G02370, Ag8G00130
Arecaceae	Cocos nucifera	1	COCNU_16G008630
Arecaceae	Phoenix dactylifera	1	gene-LOC103722531
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.55.V1.1, AsparagusV1_08.3588.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G28156, Ftri3G25886
Brassicaceae	Arabidopsis thaliana	1	AT3G54050.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010414m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g08330.v2.2, SpUn1292_0010.v2.2
Brassicaceae	Brassica nigra	2	BniB06g065670.2N, BniB08g068360.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1071
Casuarinaceae	Casuarina glauca	1	Cgl08G1096
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g18370
Dunaliellaceae	Dunaliella salina	1	Dusal.0106s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g00090
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1093
Plantaginaceae	Plantago ovata	1	Pov_00002807
Plumbaginaceae	Limonium bicolor	1	Lb4G26133
Poaceae	Echinochloa crus-galli	3	AH01.4229, BH01.4533, CH01.4835
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0242350, gene-QOZ80_3BG0285800
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0389260.1
Poaceae	Lolium multiflorum	1	gene-QYE76_069075
Poaceae	Oryza coarctata	1	Oco06G009500
Poaceae	Oryza sativa	1	LOC_Os03g16050.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G405600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0102211, Pt_Chr0102241
Poaceae	Sporobolus alterniflorus	4	Chr01G030670, Chr04G007450, Chr07G004190, Chr12G008940
Poaceae	Thinopyrum elongatum	1	Tel4E01G372200
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG012650, gene_TRIDC4BG037670
Poaceae	Triticum aestivum	3	TraesCS4A02G093100.1, TraesCS4B02G211400.1 ... TraesCS4D02G212000.1
Poaceae	Zea mays	1	Zm00001eb011940_P001
Poaceae	Zoysia japonica	3	nbis-gene-2133, nbis-gene-2134, nbis-gene-3793
Poaceae	Zoysia macrostachya	2	Zma_g1561, Zma_g3953
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.2188, evm.TU.LG17.1247
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g40380
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1751
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5542
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-1429
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3750
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.657
Rhizophoraceae	Kandelia obovata	1	Maker00016824
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4996
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13709
Salicaceae	Populus euphratica	3	populus_peu11382, populus_peu25546, populus_peu25547
Solanaceae	Lycium barbarum	3	gene-LOC132606824, gene-LOC132606825, gene-LOC132630619
Solanaceae	Solanum chilense	3	SOLCI000860300, SOLCI000860400, SOLCI003086600
Solanaceae	Solanum pennellii	2	gene-LOC107002346, gene-LOC107031241
Tamaricaceae	Reaumuria soongarica	1	STRG.26850_chr04_-
Tamaricaceae	Tamarix chinensis	2	TC02G1828, TC07G0353
Zosteraceae	Zostera marina	1	Zosma01g41020.v3.1