Basic Information
Locus ID:
Ag8G00127
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3133774 | 3135878 | - | Ag8G00127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 39,763.17 Da | 38.63 | 85.73 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 30 | 257 | 1.43231E-70 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 29 | 267 | 1.5E-62 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 30 | 261 | 9.79E-54 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 27 | 276 | 1.5E-59 | - |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 139 | 145 | - | IPR019825 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01090.1 | Concanavalin A-like lectin family protein. | 0 |
| RefSeq | XP_017220647.1 | PREDICTED: L-type lectin-domain containing receptor kinase VIII.2-like [Daucus carota subsp. sativus] | 0 |
| Q9LYX1 | L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK82 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YKL6 | Lectin_legB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.406973 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.663834 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.726787 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.558586 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.757386 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.808398 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.073504 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.970681 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 52.07235 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.618149 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 56.653728 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.811665 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.307209 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 38.073967 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.77217 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.490661 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.109957 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.979534 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.038116 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.137988 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.25886 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 54.570164 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 74.705139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 63.141396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 48.633049 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.446806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.002941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.897488 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.98844 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.394066 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.509786 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.128455 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 24.125046 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 37.316597 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.712603 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.030692 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 34.711128 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.000559 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 43.229675 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.870672 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.242395 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.58066 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 21.082565 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.924641 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.870029 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.287776 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 52.153912 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 31.281094 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.191513 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 36.29435 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14312, jg14808, jg2104, jg3304 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16498, gene_2434 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002083, Ah035229 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g024540, BVRB_3g059780, BVRB_5g102060 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg21350, Sbi_jg22497, Sbi_jg31982, Sbi_jg41995 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16382, Seu_jg25069 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009556, GOSA_00022174 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53996, Sgl59330, Sgl62490, Sgl67036 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005484, gene:ENSEOMG00000018122 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019190, CQ.Regalona.r1.2AG0020930 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285210 |
| Apiaceae | Apium graveolens | 3 | Ag10G01241, Ag2G01888, Ag8G00127 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704184 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.267.V1.1, AsparagusV1_07.65.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G10987, Ftri17G26054, Ftri3G30341, Ftri6G28500 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G09035.1, AT3G09190.1, AT3G54080.1, AT5G01090.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010505m.g.v1.0, Thhalv10013972m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g07470.v2.2, Sp5g08310.v2.2, Sp6g40480.v2.2 |
| Brassicaceae | Brassica nigra | 8 | BniB01g055490.2N, BniB01g055560.2N, BniB05g031420.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g19660 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g10320, gene.Thate02g02690, gene.Thate08g13210 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1090, evm.TU.LG02.1815 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002803, Pov_00038830 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.8, BH03.7, CH03.15 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0583690 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0158200.1.CDS1 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g01100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G070900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704953, Pt_Chr0704955 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G002890, Chr28G000040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G486000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG038420, gene_TRIDC2BG018710 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G268500.1.cds1, TraesCS2B02G287300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb298010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52650 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4643 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.963, evm.TU.LG10.1059, evm.TU.LG17.1073 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g40430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1752, evm.TU.Scaffold_2_RagTag.671 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4524, nbisL1-mrna-5543 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1427, nbisL1-mrna-17997 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3749, nbisL1-mrna-9546 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.405, add.evm.TU.utg000016l.281 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004973 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18726, nbisL1-mrna-21903 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1080, nbisL1-mrna-13711, nbisL1-mrna-16459 |
| Salicaceae | Populus euphratica | 3 | populus_peu11388, populus_peu20373, populus_peu25543 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630138, gene-LOC132630622 |
| Solanaceae | Solanum chilense | 1 | SOLCI003086300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031535 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.13170_chr07_+, STRG.26848_chr04_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC02G1822, TC05G1525, TC07G0350, TC08G0906 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41000.v3.1 |