halophFGD

Basic Information

Locus ID: Ag8G00118

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Ataxin-3 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	2929378	2933477	+	Ag8G00118

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.53	31,010.31 Da	46.46	79.32	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02099	Josephin	15	168	1.6E-49	IPR006155
Gene3D	G3DSA:3.90.70.40	-	19	172	3.7E-62	-
Gene3D	G3DSA:1.10.287.10	-	33	74	3.7E-62	-
SMART	SM01246	Josephin_2	14	170	6.5E-77	IPR006155
ProSiteProfiles	PS50957	Josephin domain profile.	7	182	24.779732	IPR006155
PRINTS	PR01233	Josephin signature	129	149	4.2E-22	-
PRINTS	PR01233	Josephin signature	108	127	4.2E-22	-
PRINTS	PR01233	Josephin signature	11	34	4.2E-22	-
PRINTS	PR01233	Josephin signature	153	172	4.2E-22	-
MobiDBLite	mobidb-lite	consensus disorder prediction	254	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	261	278	-	-

Gene Ontology

Biological Process:

GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K11863 (Ataxin-3 [EC:3.4.22.-])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54130.1	Josephin family protein.
RefSeq	XP_017220449.1	PREDICTED: ataxin-3 homolog [Daucus carota subsp. sativus]
Swiss-Prot	Q9M391	Ataxin-3 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g54130 PE=1 SV=1
TrEMBL	A0A175YJK6	ubiquitinyl hydrolase 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028833 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.20394	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.94789	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.376657	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.130042	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.711723	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.244008	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.570709	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.548397	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	31.462414	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	27.044415	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	27.83865	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.412336	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	31.250675	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	23.855488	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.989393	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	28.458559	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.404003	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	22.485846	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.445143	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	24.28499	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	23.247095	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.125616	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	28.3015	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	28.720594	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	34.274998	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	26.801868	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	25.745937	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.764948	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	23.246906	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.402007		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.951313		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.051874		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.433908		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.668501		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.045401		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	17.961855		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.746162		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	15.725131		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.279085	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.663801	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.672831	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	35.420288	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	25.987946	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	39.310387	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	33.480556	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	43.598213	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	26.829672	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.565357	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.730692	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.99321	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg32150
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15396
Amaranthaceae	Atriplex hortensis	1	Ah002208
Amaranthaceae	Beta vulgaris	1	BVRB_5g112710
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31962, Sbi_jg57377
Amaranthaceae	Salicornia europaea	1	Seu_jg25089
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028271
Amaranthaceae	Suaeda glauca	2	Sgl54007, Sgl59339
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000008220, gene:ENSEOMG00000021736 ... gene:ENSEOMG00000025654
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0014110, CQ.Regalona.r1.5BG0015330
Anacardiaceae	Pistacia vera	1	pistato.v30285330
Apiaceae	Apium graveolens	1	Ag8G00118
Arecaceae	Cocos nucifera	1	scaffold015135G000090
Arecaceae	Phoenix dactylifera	1	gene-LOC103713721
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.272.V1.1
Asteraceae	Flaveria trinervia	1	Ftri15G04476
Brassicaceae	Arabidopsis thaliana	1	AT3G54130.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010608m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g08260.v2.2
Brassicaceae	Brassica nigra	2	BniB06g065640.2N, BniB08g068420.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1058
Casuarinaceae	Casuarina glauca	1	Cgl08G1084
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g01170
Dunaliellaceae	Dunaliella salina	1	Dusal.0184s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate11g00250
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5524
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1079
Plantaginaceae	Plantago ovata	1	Pov_00002793
Plumbaginaceae	Limonium bicolor	1	Lb2G09981
Poaceae	Echinochloa crus-galli	3	AH02.3890, BH02.3914, BH07.4221
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0040100, gene-QOZ80_1BG0090130
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0074170.1, HORVU.MOREX.r3.3HG0301790.1
Poaceae	Lolium multiflorum	1	gene-QYE76_056419
Poaceae	Oryza coarctata	2	Oco01G025080, Oco02G025980
Poaceae	Oryza sativa	1	LOC_Os01g63250.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G338600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0300030, Pt_Chr0601511
Poaceae	Sporobolus alterniflorus	4	Chr02G004520, Chr03G020240, Chr05G028850, Chr0G012600
Poaceae	Thinopyrum elongatum	2	Tel1E01G455000, Tel3E01G583200
Poaceae	Triticum dicoccoides	3	gene_TRIDC1AG041590, gene_TRIDC3AG052720 ... gene_TRIDC3BG059230
Poaceae	Triticum aestivum	6	TraesCS1A02G279600.1, TraesCS1B02G288700.1 ... TraesCS1D02G278900.1, TraesCS3A02G365900.1, TraesCS3B02G397700.1, TraesCS3D02G359000.1
Poaceae	Zea mays	2	Zm00001eb147810_P002, Zm00001eb367490_P003
Poaceae	Zoysia japonica	1	nbis-gene-31634
Poaceae	Zoysia macrostachya	1	Zma_g11551
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.867, evm.TU.LG23.146
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g00300
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.1758, evm.TU.Scaffold_2_RagTag.659
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-4532, nbisL1-mrna-5559
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1421, nbisL1-mrna-18006
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3742, nbisL1-mrna-9556
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.1038, evm.TU.utg000016l.664
Rhizophoraceae	Kandelia obovata	2	Maker00005652, Maker00017209
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12758, nbisL1-mrna-4989
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-13718, nbisL1-mrna-16453
Salicaceae	Populus euphratica	2	populus_peu11396, populus_peu25534
Solanaceae	Lycium barbarum	1	gene-LOC132606820
Solanaceae	Solanum chilense	1	SOLCI000859900
Solanaceae	Solanum pennellii	1	gene-LOC107031946
Tamaricaceae	Reaumuria soongarica	1	STRG.26827_chr04_-
Tamaricaceae	Tamarix chinensis	1	TC02G1789
Zosteraceae	Zostera marina	1	Zosma01g23920.v3.1