Basic Information
Locus ID:
Ag8G00094
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring U-Box superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2596383 | 2619356 | - | Ag8G00094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 66,175.97 Da | 55.07 | 87.18 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01838 | Isoamyl_acetate_hydrolase_like | 8 | 164 | 5.18783E-60 | - |
| Pfam | PF13472 | GDSL-like Lipase/Acylhydrolase family | 3 | 154 | 2.7E-18 | IPR013830 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 505 | 551 | 1.5E-12 | - |
| Pfam | PF16041 | Domain of unknown function (DUF4793) | 327 | 433 | 9.7E-29 | IPR032010 |
| SUPERFAMILY | SSF52266 | SGNH hydrolase | 3 | 164 | 3.66E-28 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 506 | 552 | 1.72E-9 | - |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 2 | 191 | 1.6E-41 | IPR036514 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 486 | 554 | 2.2E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 507 | 546 | 10.910707 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 480 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11210.1 | SGNH hydrolase-type esterase superfamily protein. | 0 |
| RefSeq | XP_017221925.1 | PREDICTED: uncharacterized protein LOC108198661 [Daucus carota subsp. sativus] | 0 |
| Q7XXR3 | GDSL esterase/lipase WDL1 OS=Oryza sativa subsp. japonica OX=39947 GN=WDL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YKG1 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028848 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.936856 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.689864 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.467 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.7139 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.852607 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.437258 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.514726 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.118386 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.908066 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.61384 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.566689 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.18895 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.621506 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.087454 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.06909 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.288843 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.106489 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.351513 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 30.412514 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.261013 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 50.392208 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.029581 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.174193 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.977887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.577751 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.86388 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 39.418385 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 34.170929 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.765072 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.336966 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.863186 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.866855 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.225793 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.269501 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.349476 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.990731 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.985815 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.26548 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.696364 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.607415 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.169239 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.421324 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.375801 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.970418 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.967749 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.834975 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.021649 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.824369 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.466833 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.379002 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14275, jg14779, jg3262, jg3263, jg34131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24297 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21422, Sbi_jg22433 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16313 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016448 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62866, Sgl67481 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018539, gene:ENSEOMG00000020643 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019770, CQ.Regalona.r1.2AG0021490 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30176880, pistato.v30269850 |
| Apiaceae | Apium graveolens | 2 | Ag5G01414, Ag8G00094 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G005270, contig69543397G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704017, gene-LOC103715137, gene-LOC103715941 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.19.V1.1, AsparagusV1_07.2101.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G23662, Ftri8G27274, Ftri9G05926 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G38180.1, AT3G11210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017306m.g.v1.0, Thhalv10021365m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g09490.v2.2, Sp4g20500.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g006680.2N, BniB01g053850.2N, BniB07g057120.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0141, Ceq04G1468, Ceq08G1019, Ceq08G1415 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0157, Cgl08G1041, Cgl08G1043 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g18640 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g13100 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1021, evm.TU.LG02.1867 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00002751, Pov_00006515, Pov_00006517, Pov_00011804 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02621 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1936, BH05.2057, CH05.2129 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0693430, gene-QOZ80_9BG0719190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0357220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065335 |
| Poaceae | Oryza coarctata | 2 | Oco21G010310, Oco22G011640 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g48070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G119000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G013450, Chr16G003830, Chr17G003530, Chr26G000250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G215300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG028710, gene_TRIDC4BG021750 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G178800.2, TraesCS4B02G139000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb065870_P002, Zm00001eb433910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18446, nbis-gene-45947 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18302, Zma_g19174 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.Contig33.3, evm.TU.LG17.1008 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00040 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1814, evm.TU.Scaffold_2_RagTag.634 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-25912, nbisL1-mrna-4556, nbisL1-mrna-5600 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1390, nbisL1-mrna-16650 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1446, nbisL1-mrna-3701, nbisL1-mrna-3702 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.620, evm.TU.utg000009l.1022 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001383, Maker00006086, Maker00016377 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17794, nbisL1-mrna-1980, nbisL1-mrna-4957 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13761, nbisL1-mrna-9297 |
| Salicaceae | Populus euphratica | 7 | populus_peu05349, populus_peu05350, populus_peu06543 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608907, gene-LOC132630778 |
| Solanaceae | Solanum chilense | 2 | SOLCI001422300, SOLCI001770900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021046, gene-LOC107032392 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21536_chr08_+, gene_5425 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1771, TC05G1818 |
| Zosteraceae | Zostera marina | 1 | Zosma04g15690.v3.1 |