Basic Information
Locus ID:
Ag8G00088
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CPK20
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2554115 | 2556329 | - | Ag8G00088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 15,269.03 Da | 54.92 | 86.10 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00036 | EF hand | 102 | 127 | 1.5E-7 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 29 | 88 | 1.5E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 21 | 129 | 4.97E-35 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 134 | 1.9E-40 | - |
| SMART | SM00054 | efh_1 | 28 | 56 | 4.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 100 | 128 | 2.8E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 64 | 92 | 0.03 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 96 | 131 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 60 | 95 | 9.910664 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 24 | 59 | 14.84815 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 109 | 121 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 37 | 49 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 73 | 85 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38910.1 | calcium-dependent protein kinase 20. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_017246244.1 | PREDICTED: calcium-dependent protein kinase 11 [Daucus carota subsp. sativus] | 0 |
| Q2QX45 | Calcium-dependent protein kinase 28 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK28 PE=3 SV=1 | 0 | |
| TrEMBL | A0A166G445 | Calcium-dependent protein kinase 11-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001047 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.409559 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.757957 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.75803 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.949735 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.917889 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.736138 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.237418 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.701898 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.40817 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.089276 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.98349 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.447327 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.011811 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.169816 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.937746 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.066257 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.771894 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.968424 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.822477 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.890147 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.220545 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.396872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.019352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.981289 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.796429 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.156302 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.514956 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.861806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.796369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.994823 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.111272 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.338857 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.544414 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.654743 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.67194 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.269992 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.225337 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.315094 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.213662 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.410982 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.811896 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.281088 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.858101 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.05875 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.719938 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.178631 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.551453 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.515819 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.250204 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.877886 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah033093, Ah036874 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68967 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004643, gene:ENSEOMG00000006606 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0009830, CQ.Regalona.r1.7BG0018650 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G01810, Ag8G00088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1311.V1.1 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043470.2N, BniB03g056960.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032026 |
| Poaceae | Echinochloa crus-galli | 1 | CH04.446 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G027700 |
| Poaceae | Zea mays | 2 | Zm00001eb015740_P001, Zm00001eb168390_P001 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18442, nbisL1-mrna-18491 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5501 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22750.v3.1 |