halophFGD

Basic Information

Locus ID: Ag8G00083

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Seed dormancy control

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	2488560	2489511	+	Ag8G00083

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.49	27,175.47 Da	45.11	84.98	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14144	Seed dormancy control	37	112	5.0E-22	IPR025422
ProSiteProfiles	PS51806	DOG1 domain profile.	19	236	28.70862	IPR025422

Gene Ontology

Biological Process:

GO:0006351 (DNA-templated transcription)

Molecular Function:

GO:0043565 (sequence-specific DNA binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017222163.1	PREDICTED: transcription factor HBP-1b(c38)-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A175YJH2	DOG1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028859 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	71.543587	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	46.880302	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	66.515625	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	47.962753	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	52.3647	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	56.194031	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	48.249939	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	67.734894	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.168725	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.562971	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.668841	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	10.74537	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.27835	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.16141	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.586298	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.56289	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.129687	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.102513	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.343894	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.07283	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.095301	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.248811	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.252589	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.382618	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.296409	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.0517	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.183553		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.130503		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.286673		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.83166		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.676148		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.401335		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.240256		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.448772		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.514506	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.44788	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.348663	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.03792	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.322603	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.604919	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.083285	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.781372	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.703085	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.079906	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	8.689641	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.168042	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19136, jg22156, jg22158, jg24960, jg24961
Aizoaceae	Mesembryanthemum crystallinum	7	gene_10313, gene_11882, gene_2262, gene_2263, gene_442 ... gene_7544, gene_8537
Amaranthaceae	Atriplex hortensis	8	Ah005490, Ah005491, Ah005493, Ah005495, Ah005496, Ah008970 ... Ah008971, Ah017049
Amaranthaceae	Beta vulgaris	4	BVRB_4g078280, BVRB_4g078290, BVRB_5g102840, BVRB_8g180960
Amaranthaceae	Salicornia bigelovii	14	Sbi_jg17707, Sbi_jg17709, Sbi_jg19174, Sbi_jg23739 ... Sbi_jg37588, Sbi_jg40404, Sbi_jg45390, Sbi_jg4749, Sbi_jg50401, Sbi_jg62379, Sbi_jg62380, Sbi_jg62382, Sbi_jg7323, Sbi_jg7583
Amaranthaceae	Salicornia europaea	9	Seu_jg11252, Seu_jg12451, Seu_jg12690, Seu_jg1978, Seu_jg947 ... Seu_jg5432, Seu_jg952, Seu_jg953, Seu_jg954
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00001242, GOSA_00001421, GOSA_00006724, GOSA_00007277 ... GOSA_00007281, GOSA_00011549
Amaranthaceae	Suaeda glauca	25	Sgl12689, Sgl15599, Sgl17935, Sgl23324, Sgl23973, Sgl23974 ... Sgl23979, Sgl28393, Sgl28433, Sgl29152, Sgl29153, Sgl29158, Sgl34993, Sgl35127, Sgl35137, Sgl40511, Sgl40519, Sgl45462, Sgl50246, Sgl51702, Sgl51937, Sgl51938, Sgl57007, Sgl57230, Sgl57231
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000002471, gene:ENSEOMG00000003306 ... gene:ENSEOMG00000007129, gene:ENSEOMG00000009296, gene:ENSEOMG00000011024, gene:ENSEOMG00000011419, gene:ENSEOMG00000025265, gene:ENSEOMG00000025814, gene:ENSEOMG00000026324, gene:ENSEOMG00000028887, gene:ENSEOMG00000030516, gene:ENSEOMG00000034142, gene:ENSEOMG00000041447, gene:ENSEOMG00000041681, gene:ENSEOMG00000042535, gene:ENSEOMG00000043557
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.2BG0006020, CQ.Regalona.r1.4AG0005870 ... CQ.Regalona.r1.4AG0005890, CQ.Regalona.r1.4BG0006040, CQ.Regalona.r1.4BG0006050, CQ.Regalona.r1.5BG0010830, CQ.Regalona.r1.8AG0007170, CQ.Regalona.r1.8BG0008100
Anacardiaceae	Pistacia vera	4	pistato.v30042500, pistato.v30072160, pistato.v30162590 ... pistato.v30267180
Apiaceae	Apium graveolens	12	Ag11G03187, Ag2G00018, Ag2G00019, Ag2G00020, Ag2G00689 ... Ag2G01111, Ag3G00452, Ag3G01863, Ag7G00825, Ag8G00083, Ag8G01750, AgUnG01061
Arecaceae	Cocos nucifera	4	COCNU_04G003040, COCNU_04G003050, COCNU_04G014140 ... COCNU_06G005580
Arecaceae	Phoenix dactylifera	4	gene-LOC103706883, gene-LOC103709645, gene-LOC103718906 ... gene-LOC103720042
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.444.V1.1
Asteraceae	Flaveria trinervia	11	Ftri12G03135, Ftri12G25162, Ftri13G08627, Ftri14G25545 ... Ftri14G26179, Ftri15G12732, Ftri15G20374, Ftri6G08617, Ftri7G15618, Ftri9G07682, FtriNA04671
Brassicaceae	Arabidopsis thaliana	8	AT1G09950.1, AT1G58330.1, AT3G14880.1, AT4G18650.1 ... AT4G18660.1, AT4G18680.1, AT4G18690.1, AT5G45830.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10001138m.g.v1.0, Thhalv10005017m.g.v1.0 ... Thhalv10008665m.g.v1.0, Thhalv10022387m.g.v1.0, Thhalv10025925m.g.v1.0, Thhalv10027005m.g.v1.0, Thhalv10027258m.g.v1.0, Thhalv10027388m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g08610.v2.2, Sp2g10750.v2.2, Sp3g13090.v2.2 ... Sp7g17390.v2.2, Sp7g17400.v2.2
Brassicaceae	Brassica nigra	8	BniB01g050150.2N, BniB02g005090.2N, BniB02g062780.2N ... BniB02g071790.2N, BniB04g016040.2N, BniB04g029690.2N, BniB05g017680.2N, BniB05g017690.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G0943
Casuarinaceae	Casuarina glauca	1	Cgl01G1061
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4875, nbisL1-mrna-914
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1001, evm.TU.LG02.913, evm.TU.LG05.1441 ... evm.TU.LG06.274, evm.TU.LG12.811, evm.TU.LG12.812
Plantaginaceae	Plantago ovata	21	Pov_00002735, Pov_00005571, Pov_00005575, Pov_00009685 ... Pov_00009687, Pov_00013589, Pov_00014110, Pov_00021316, Pov_00021589, Pov_00021592, Pov_00021594, Pov_00022794, Pov_00023388, Pov_00029533, Pov_00033416, Pov_00034796, Pov_00037833, Pov_00037834, Pov_00038373, Pov_00040529, Pov_00041573
Plumbaginaceae	Limonium bicolor	3	Lb2G09207, Lb2G09208, Lb4G23262
Poaceae	Echinochloa crus-galli	16	AH02.1426, AH02.2676, AH02.3328, AH02.571, AH05.1422 ... BH02.1501, BH02.3640, BH02.576, BH04.2075, BH05.1592, BH09.1670, CH01.2449, CH02.1635, CH02.652, CH05.1794, CH09.1746
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0010580, gene-QOZ80_1AG0014270 ... gene-QOZ80_1AG0033940, gene-QOZ80_1BG0059080, gene-QOZ80_1BG0063090, gene-QOZ80_1BG0084010, gene-QOZ80_5AG0363430, gene-QOZ80_5BG0411520
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0086840.1.CDS1 ... HORVU.MOREX.r3.2HG0199880.1.CDS1, HORVU.MOREX.r3.3HG0235930.1, HORVU.MOREX.r3.3HG0290160.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_004063, gene-QYE76_013909, gene-QYE76_050097 ... gene-QYE76_055110, gene-QYE76_055144
Poaceae	Oryza coarctata	8	Oco01G002340, Oco01G008990, Oco01G020740, Oco02G002290 ... Oco02G009170, Oco02G021310, Oco09G016630, Oco10G016460
Poaceae	Oryza sativa	3	LOC_Os01g06560.1, LOC_Os01g20030.1, LOC_Os05g48650.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G056900, gene-BS78_03G133700 ... gene-BS78_03G282800, gene-BS78_06G152100, gene-BS78_09G233200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205323, Pt_Chr0205401, Pt_Chr0602674
Poaceae	Sporobolus alterniflorus	5	Chr01G015520, Chr02G021770, Chr02G023080, Chr12G021250 ... Chr25G008860
Poaceae	Thinopyrum elongatum	4	Tel1E01G642700, Tel2E01G823300, Tel3E01G180000 ... Tel3E01G483200
Poaceae	Triticum dicoccoides	9	gene_TRIDC1AG057720, gene_TRIDC1BG066460 ... gene_TRIDC2AG001100, gene_TRIDC2AG068540, gene_TRIDC2BG074050, gene_TRIDC3AG012610, gene_TRIDC3AG043770, gene_TRIDC3BG016940, gene_TRIDC3BG049750
Poaceae	Triticum aestivum	12	TraesCS1A02G392200.1.cds1, TraesCS1B02G420300.1.cds1 ... TraesCS1D02G400300.1.cds1, TraesCS2A02G010800.1.cds1, TraesCS2A02G486100.1.cds1, TraesCS2B02G512700.1.cds1, TraesCS3A02G103500.1, TraesCS3A02G306200.1.cds1, TraesCS3B02G120900.1, TraesCS3B02G330400.1.cds1, TraesCS3D02G105800.1, TraesCS3D02G295800.1.cds1
Poaceae	Zea mays	5	Zm00001eb130290_P001, Zm00001eb152510_P001 ... Zm00001eb223390_P002, Zm00001eb295650_P001, Zm00001eb339990_P001
Poaceae	Zoysia japonica	7	nbis-gene-13068, nbis-gene-13492, nbis-gene-13684 ... nbis-gene-24873, nbis-gene-31126, nbis-gene-55567, nbis-gene-6902
Poaceae	Zoysia macrostachya	5	Zma_g11193, Zma_g11194, Zma_g7636, Zma_g7873, Zma_g9995
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.431, evm.TU.LG02.795, evm.TU.LG04.330 ... evm.TU.LG06.1281, evm.TU.LG09.1966, evm.TU.LG10.503, evm.TU.LG11.626, evm.TU.LG12.1732, evm.TU.LG17.511, evm.TU.LG26.493
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.297
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-19336, nbisL1-mrna-19338, nbisL1-mrna-22065 ... nbisL1-mrna-24035
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000016l.294, add.evm.TU.utg000027l.76
Salicaceae	Populus euphratica	4	populus_peu00606, populus_peu09932, populus_peu13718 ... populus_peu22878
Solanaceae	Lycium barbarum	10	gene-LOC132606995, gene-LOC132619047, gene-LOC132619255 ... gene-LOC132621877, gene-LOC132623160, gene-LOC132623511, gene-LOC132624520, gene-LOC132624839, gene-LOC132638575, gene-LOC132639984
Solanaceae	Solanum chilense	12	SOLCI001500200, SOLCI001823300, SOLCI002531800 ... SOLCI002532000, SOLCI002604000, SOLCI002834500, SOLCI004458700, SOLCI005478400, SOLCI005478500, SOLCI006211200, SOLCI006258200, SOLCI007529700
Solanaceae	Solanum pennellii	12	gene-LOC107002036, gene-LOC107005953, gene-LOC107009570 ... gene-LOC107009614, gene-LOC107010348, gene-LOC107010384, gene-LOC107010561, gene-LOC107010747, gene-LOC107014256, gene-LOC107020678, gene-LOC107025642, gene-LOC107030777
Tamaricaceae	Reaumuria soongarica	7	STRG.22017_chr08_+, STRG.24916_chr08_-, gene_11327 ... gene_11967, gene_17992, gene_4426, gene_9749
Tamaricaceae	Tamarix chinensis	1	TC02G1498
Zosteraceae	Zostera marina	1	Zosma02g21440.v3.1