halophFGD

Basic Information

Locus ID: Ag8G00081

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	2467303	2472216	+	Ag8G00081

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.64	45,298.47 Da	37.23	74.01	-0.67

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	242	348	1.9E-5	IPR000569
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	131	347	2.75E-14	IPR035983
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	97	244	9.3E-8	-
ProSiteProfiles	PS50237	HECT domain profile.	246	347	9.306135	IPR000569
MobiDBLite	mobidb-lite	consensus disorder prediction	1	66	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	46	63	-	-

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K10590 (E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017257692.1	PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A164V636	HECT-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022772 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.583413	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.896342	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.593988	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.788916	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.789573	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.235387	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.68757	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.899571	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.128537	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.902581	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.407362	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.332834	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.275031	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.945168	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.421849	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.030817	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.501837	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.287993	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.457262	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.728863	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.83124	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.125755	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.594268	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.98326	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.724819	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.684225	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.682707	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.957178	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.261896	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.340649		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.693273		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.097324		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.213712		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.234013		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.020318	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.239832	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.173971	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.38682	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.389067	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.565493	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.942672	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.399385	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.334682	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.49838	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.997477	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.230253	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag8G00077, Ag8G00080, Ag8G00081