halophFGD

Basic Information

Locus ID: Ag8G00080

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	2466480	2467151	+	Ag8G00080

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.64	24,730.00 Da	45.09	94.89	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K10590 (E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38600.2	HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.
RefSeq	XP_017257692.1	PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6WWW4	E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1
TrEMBL	A0A3G0ZGY7	Putative HECT ubiquitin protein ligase (Fragment) OS=Juglans sigillata OX=224355 GN=UBE3 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.528343	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.362371	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.161073	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.550753	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.480572	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.323575	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.455329	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.17588	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.198602	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.377537	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.253897	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.774923	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.342631	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.920866	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.285668	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.389407	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.551293	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.544786	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.140975	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.268322	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.462052	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.380728	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.617458	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.712218	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.19349	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.954838	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.197304	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.685049	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.320824		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.193532		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.088998		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.570794		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.327608	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.400947	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.274662	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.263122	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.281852	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.533387	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.699431	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.129416	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.412592	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.574324	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.974283	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.180973	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag8G00077, Ag8G00080, Ag8G00081