Basic Information
Locus ID:
Ag8G00053
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1247995 | 1248312 | + | Ag8G00053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 7,272.00 Da | 45.55 | 81.91 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 63 | 4.0E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 68 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51740.1 | inflorescence meristem receptor-like kinase 2. encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. | 0 |
| RefSeq | XP_017223332.1 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9SCT4 | Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana OX=3702 GN=IMK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YIZ5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028884 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.142627 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.358989 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.076609 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.483067 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.262908 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.038591 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 49.186665 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.841373 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 52.403419 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.68454 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.384336 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 32.934273 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.015085 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.113149 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.936472 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.405666 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.89117 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.862136 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.289256 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 56.110935 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 54.088844 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 92.023888 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 46.963188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.573677 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.253033 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.739916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.410372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.977595 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.921674 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.738918 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 64.195892 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.346025 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.454015 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.385374 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 50.992817 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.241144 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.981019 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.416794 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.388163 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.125499 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.614157 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.226264 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.090947 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 84.003517 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 116.510323 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 125.833321 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10054, jg3223, jg34105 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17044, gene_2292 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003217, Ah035126 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103410 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21512, Sbi_jg22304, Sbi_jg24302, Sbi_jg8132 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11890, Seu_jg16233 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008824, GOSA_00010969 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl52485, Sgl57780, Sgl62779, Sgl67395 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000016331, gene:ENSEOMG00000017547 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0020510, CQ.Regalona.r1.2AG0022240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30177530 |
| Apiaceae | Apium graveolens | 1 | Ag8G00053 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003850, COCNU_16G006070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714373, gene-LOC103721516 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.616.V1.1, AsparagusV1_08.3390.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G18439, Ftri18G26967, Ftri9G29010 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G51740.1, AT3G56100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006389m.g.v1.0, Thhalv10010123m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g06430.v2.2, Sp5g10540.v2.2 |
| Brassicaceae | Brassica nigra | 9 | BniB05g021670.2N, BniB06g055850.2N, BniB06g056600.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0071, Ceq08G0956 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0080, Cgl08G0974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00750 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate01g31960, gene.Thate02g08360, gene.Thate04g26270 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3630, nbisL1-mrna-3923, nbisL1-mrna-6067 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.949, evm.TU.LG02.1925 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002652, Pov_00011746, Pov_00040611 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G04054, Lb2G09143, Lb2G09152, Lb3G16166, Lb3G19314 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.3948, AH05.71, BH01.4347, BH04.44, CH01.4579, CH04.48 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0244750, gene-QOZ80_3BG0283330 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0117160.1, HORVU.MOREX.r3.4HG0354540.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_003694, gene-QYE76_003695, gene-QYE76_065367 ... |
| Poaceae | Oryza coarctata | 3 | Oco05G010980, Oco06G011230, Oco22G000200 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g18630.1, LOC_Os11g01620.1, LOC_Os12g01700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G385500 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0102491, Pt_Chr0103573, Pt_Chr0103620, Pt_Chr0702851 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G032340, Chr04G009030, Chr04G020830, Chr06G022480 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G271900, Tel4E01G212900, Tel4E01G339500 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG016200, gene_TRIDC2BG019510 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2A02G131700.1, TraesCS2B02G154100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013800_P001, Zm00001eb195080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1928, nbis-gene-25834 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1425, Zma_g24603 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2803, evm.TU.LG05.537, evm.TU.LG10.23 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g13520 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1870, evm.TU.Scaffold_2_RagTag.582 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27432 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1348, nbisL1-mrna-16989, nbisL1-mrna-8211 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1491, nbisL1-mrna-3659, nbisL1-mrna-9612 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000008l.220, evm.TU.utg000009l.990 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005646, Maker00016379 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-14322, nbisL1-mrna-2659, nbisL1-mrna-4920 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19384 |
| Salicaceae | Populus euphratica | 4 | populus_peu06601, populus_peu11471, populus_peu20484 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609120, gene-LOC132630936, gene-LOC132640425 |
| Solanaceae | Solanum chilense | 3 | SOLCI003903700, SOLCI004778600, SOLCI004993400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107020781, gene-LOC107021434, gene-LOC107031627 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24956_chr08_-, gene_13941 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G4372, TC05G2755 |
| Zosteraceae | Zostera marina | 2 | Zosma02g07370.v3.1, Zosma06g15060.v3.1 |