Basic Information
Locus ID:
Ag8G00027
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1040971 | 1043101 | + | Ag8G00027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 34,221.78 Da | 64.97 | 79.12 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08760.1 | Protein kinase superfamily protein. Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants. | 0 |
| RefSeq | XP_017223545.1 | PREDICTED: serine/threonine-protein kinase At5g01020-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A175YJD0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028913 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.723173 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.062692 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.407009 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.766441 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.516987 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.739531 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.53318 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.817695 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.019611 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.599328 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.851074 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.085952 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.344383 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.006945 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.111069 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.354004 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.264766 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.619742 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.738666 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.503759 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.117694 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.182229 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.174875 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.229681 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.14451 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.280826 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.469204 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.086426 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.13676 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.452043 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.928721 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.832468 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14698, jg3170 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20420 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031493 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g157240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2181, Sbi_jg34333 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2591 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005910 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71093, Sgl74667 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008485, gene:ENSEOMG00000034893 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0022820, CQ.Regalona.r1.7BG0025410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30269140 |
| Apiaceae | Apium graveolens | 3 | Ag5G02813, Ag8G00027, Ag8G00028 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G004610, COCNU_12G006250, COCNU_16G005780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706258, gene-LOC103708903, gene-LOC103720401 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.368.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33743 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020426m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g055790.2N, BniB07g058530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0890 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0907 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g31310, gene.Thate06g03700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4872 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.873 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002598 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08990, Lb2G08993 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3703, BH02.3257, CH02.3985 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038100, gene-QOZ80_1BG0088110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055671 |
| Poaceae | Oryza coarctata | 2 | Oco01G023520, Oco02G024280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g60700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G319000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601818, Pt_Chr0601846 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G006150, Chr03G018910, Chr05G027230, Chr08G023060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G550800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049650, gene_TRIDC3BG055890 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G344400.2, TraesCS3B02G376300.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb037560_P001, Zm00001eb149520_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11564, nbis-gene-31456 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11427, Zma_g8899 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.878, evm.TU.LG15.785 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g33260 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1917, evm.TU.Scaffold_2_RagTag.543 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4653, nbisL1-mrna-5684 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2089, nbisL1-mrna-9497 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3615, nbisL1-mrna-9646 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.629, evm.TU.utg000016l.759 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005724, Maker00017161 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2629, nbisL1-mrna-4895 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13851, nbisL1-mrna-16620 |
| Salicaceae | Populus euphratica | 2 | populus_peu11508, populus_peu25269 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606732, gene-LOC132631072 |
| Solanaceae | Solanum chilense | 2 | SOLCI004260300, SOLCI005576400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107031727, gene-LOC107031856 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1663_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0989 |
| Zosteraceae | Zostera marina | 1 | Zosma01g19380.v3.1 |