Basic Information
Locus ID:
Ag8G00014
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 960474 | 963538 | - | Ag8G00014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 60,165.50 Da | 41.55 | 96.07 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 319 | 519 | 5.8E-19 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 173 | 520 | 1.04E-31 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 167 | 286 | 5.2E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 314 | 521 | 7.4E-44 | - |
| SMART | SM00220 | serkin_6 | 176 | 519 | 2.1E-10 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 176 | 519 | 24.131697 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 346 | 358 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 182 | 208 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01920.1 | Protein kinase superfamily protein. Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2. | 0 |
| RefSeq | XP_017223162.1 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9LZV4 | Serine/threonine-protein kinase STN8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STN8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BIS2 | Protein kinase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_037092 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.167523 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.014492 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.7371 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.406191 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.409234 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.717684 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.932328 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.554501 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.482054 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.907663 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.545666 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.960346 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.083525 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.800425 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.747427 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.17619 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.081017 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.072857 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.861509 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.904345 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.199743 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.337779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.699675 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.61093 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.615592 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.029163 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.397768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.568707 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.577642 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 30.520718 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 38.437572 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 37.461517 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 37.419903 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.651326 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.542845 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 27.843849 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.779179 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 22.079771 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 42.376369 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 55.113075 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 91.257881 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.712468 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.776883 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.860285 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.520037 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.736385 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.664327 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.961022 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.611652 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.191663 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3152 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20435 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031562 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2128, Sbi_jg34375 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2639 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005856 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71136, Sgl71139, Sgl74719, Sgl74722 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008187, gene:ENSEOMG00000037311 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0023230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30269350 |
| Apiaceae | Apium graveolens | 1 | Ag8G00014 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3334.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G30258 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013451m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g41170.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g000080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1320s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.851 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09537 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2017, BH05.2155, CH05.2227 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0369240, gene-QOZ80_5AG0369700 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0070840.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014066, gene-QYE76_014093 |
| Poaceae | Oryza coarctata | 2 | Oco09G012320, Oco10G012440 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g40180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G183100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504556, Pt_Chr0702120 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G018400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G487600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG044750, gene_TRIDC1BG050640 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G301400.1, TraesCS1B02G311200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb290720_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14254 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26996 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.201, evm.TU.LG15.763 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.528 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4663 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2080 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9656 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.639 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005116 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2621 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16609 |
| Salicaceae | Populus euphratica | 2 | populus_peu11525, populus_peu25249 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606954 |
| Solanaceae | Solanum chilense | 1 | SOLCI004774200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002491 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1639_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0961 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30590.v3.1 |