halophFGD

Basic Information

Locus ID: Ag7G02507

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	272136885	272146169	+	Ag7G02507

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.99	30,249.70 Da	44.62	93.04	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00338	Ribosomal protein S10p/S20e	167	260	2.2E-8	IPR027486
SUPERFAMILY	SSF54999	Ribosomal protein S10	165	261	8.24E-12	IPR036838
Gene3D	G3DSA:3.30.70.600	Ribosomal protein S10 domain	155	263	4.4E-17	IPR036838
SMART	SM01403	Ribosomal_S10_2	167	261	1.2E-8	IPR027486
Hamap	MF_00508	30S ribosomal protein S10 [rpsJ].	163	262	11.94911	IPR001848

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_034897333.1	40S ribosomal protein S20-2-like [Populus alba]
Swiss-Prot	P35686	Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2
TrEMBL	A0A835W8S0	Ribosomal_S10 domain-containing protein OS=Chlamydomonas incerta OX=51695 GN=HXX76_003432 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.522743	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.352734	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.204508	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.911348	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.454157	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.575636	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.901048	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.69739	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	68.332619	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	64.799759	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	62.218353	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	65.835938	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	59.578323	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	56.183174	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	35.807766	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	37.438709	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	44.182064	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	43.18478	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	46.038967	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	39.269279	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	42.980579	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	48.693512	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	54.008556	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	48.040314	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	53.45364	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	44.76952	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	46.713161	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	39.585766	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	42.614487	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	40.030907		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	24.529554		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.210222		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	22.252872		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	47.450375		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	31.278141		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	38.22348	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	25.646959	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	12.672733	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	44.600483	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	59.577339	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	69.972656	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	71.152733	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	63.547462	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	73.894386	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.504215	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	29.872543	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.955914	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg14085, jg16534, jg34021
Aizoaceae	Mesembryanthemum crystallinum	2	gene_16050, gene_3133
Amaranthaceae	Atriplex hortensis	1	Ah019074
Amaranthaceae	Beta vulgaris	1	BVRB_3g055730
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14020, Sbi_jg15373, Sbi_jg51937, Sbi_jg56192
Amaranthaceae	Salicornia europaea	2	Seu_jg26660, Seu_jg9929
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006995, GOSA_00020272
Amaranthaceae	Suaeda glauca	4	Sgl02150, Sgl07309, Sgl22952, Sgl28074
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005186, gene:ENSEOMG00000031212 ... gene:ENSEOMG00000043434
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0001480, CQ.Regalona.r1.3BG0001560
Anacardiaceae	Pistacia vera	1	pistato.v30181330
Apiaceae	Apium graveolens	4	Ag10G02663, Ag10G02664, Ag7G02503, Ag7G02507
Arecaceae	Cocos nucifera	3	COCNU_09G002160, scaffold014082G000020 ... scaffold019114G000040
Arecaceae	Phoenix dactylifera	6	gene-LOC103697438, gene-LOC103710562, gene-LOC103717396 ... gene-LOC103723774, gene-LOC120107683, gene-LOC120108538
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1308.V1.1, AsparagusV1_04.1165.V1.1 ... AsparagusV1_10.122.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G04238, Ftri11G17853, Ftri12G18947, Ftri15G20647 ... Ftri3G08259
Brassicaceae	Arabidopsis thaliana	3	AT3G45030.1, AT3G47370.2, AT5G62300.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005136m.g.v1.0, Thhalv10010823m.g.v1.0 ... Thhalv10015032m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g25580.v2.2, Sp5g14530.v2.2, Sp6g13770.v2.2
Brassicaceae	Brassica nigra	3	BniB06g010670.2N, BniB07g041540.2N, BniB08g017740.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2009, Ceq02G2010
Casuarinaceae	Casuarina glauca	2	Cgl02G2083, Cgl02G2084
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g02350, gene.Cymno13g02380
Dunaliellaceae	Dunaliella salina	1	Dusal.0043s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g16150, gene.Thate02g16650, gene.Thate05g28420 ... gene.Thate09g00150
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2290
Plantaginaceae	Plantago ovata	4	Pov_00012522, Pov_00034051, Pov_00035129, Pov_00040821
Plumbaginaceae	Limonium bicolor	3	Lb1G00731, Lb1G07184, Lb1G07188
Poaceae	Echinochloa crus-galli	9	AH01.2457, AH01.4334, AH06.122, BH01.2803, BH01.4640 ... BH06.222, CH01.3007, CH01.4955, CH06.205
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0120730, gene-QOZ80_2BG0175630 ... gene-QOZ80_3AG0241060, gene-QOZ80_3BG0287060, gene-QOZ80_6AG0507590, gene-QOZ80_6BG0459670
Poaceae	Lolium multiflorum	5	gene-QYE76_005086, gene-QYE76_027680, gene-QYE76_035238 ... gene-QYE76_035463, gene-QYE76_063515
Poaceae	Oryza coarctata	6	Oco05G008190, Oco06G008470, Oco11G001710, Oco12G001580 ... Oco19G001300, Oco20G001450
Poaceae	Oryza sativa	3	LOC_Os03g14530.1, LOC_Os06g04290.1, LOC_Os10g08930.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G417600, gene-BS78_10G025800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0401986
Poaceae	Sporobolus alterniflorus	7	Chr01G029530, Chr04G000360, Chr07G000410, Chr11G023650 ... Chr12G009990, Chr14G001260, Chr21G000350
Poaceae	Thinopyrum elongatum	3	Tel5E01G068100, Tel5E01G078000, Tel7E01G149800
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG010400, gene_TRIDC5AG004730 ... gene_TRIDC5BG004280, gene_TRIDC5BG005090
Poaceae	Triticum aestivum	8	TraesCS2A02G485400.1, TraesCS3B02G001700.1 ... TraesCS4A02G417400.1, TraesCS5A02G032000.1, TraesCS5B02G027300.1, TraesCS5D02G035600.1, TraesCS5D02G040400.1, TraesCS7D02G066800.1
Poaceae	Zea mays	3	Zm00001eb010700_P001, Zm00001eb378000_P002 ... Zm00001eb398590_P001
Poaceae	Zoysia japonica	4	nbis-gene-2259, nbis-gene-3881, nbis-gene-40335 ... nbis-gene-53838
Poaceae	Zoysia macrostachya	5	Zma_g1641, Zma_g29056, Zma_g31298, Zma_g31299, Zma_g4023
Portulacaceae	Portulaca oleracea	3	evm.TU.LG05.21, evm.TU.LG11.1540, evm.TU.LG25.1307
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g29860, gene.Posoc03g09470, gene.Posoc10g04990
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.1284, evm.TU.Scaffold_2_RagTag.889 ... evm.TU.Scaffold_4_RagTag.247
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12595, nbisL1-mrna-12596, nbisL1-mrna-29105
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18579, nbisL1-mrna-6870
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10001, nbisL1-mrna-12860, nbisL1-mrna-2049
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.155, evm.TU.utg000009l.887 ... evm.TU.utg000010l.320
Rhizophoraceae	Kandelia obovata	3	Maker00000339, Maker00005623, Maker00008938
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-21849, nbisL1-mrna-2431, nbisL1-mrna-547
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-2279, nbisL1-mrna-5846, nbisL1-mrna-6170 ... nbisL1-mrna-8935
Salicaceae	Populus euphratica	7	populus_peu27857, populus_peu29138, populus_peu29159 ... populus_peu30519, populus_peu31789, populus_peu31790, populus_peu32073
Solanaceae	Lycium barbarum	3	gene-LOC132608835, gene-LOC132636382, gene-LOC132645361
Solanaceae	Solanum chilense	2	SOLCI006813900, SOLCI006814000
Solanaceae	Solanum pennellii	2	gene-LOC107003272, gene-LOC107010353
Tamaricaceae	Reaumuria soongarica	2	STRG.30525_chr10_-, STRG.30526_chr10_-
Tamaricaceae	Tamarix chinensis	1	TC05G0266
Zosteraceae	Zostera marina	2	Zosma01g35680.v3.1, Zosma03g23740.v3.1