halophFGD

Basic Information

Locus ID: Ag7G02495

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	271650741	271652738	-	Ag7G02495

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.22	58,882.62 Da	41.20	71.66	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01485	IBR domain, a half RING-finger domain	276	321	8.9E-9	IPR002867
Pfam	PF01485	IBR domain, a half RING-finger domain	187	252	7.9E-12	IPR002867
SUPERFAMILY	SSF57850	RING/U-box	271	322	1.92E-17	-
SUPERFAMILY	SSF57850	RING/U-box	191	259	4.94E-9	-
SUPERFAMILY	SSF57850	RING/U-box	110	198	4.29E-13	-
Gene3D	G3DSA:1.20.120.1750	-	248	498	9.8E-74	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	109	198	7.5E-13	IPR013083
SMART	SM00647	ibrneu5	256	321	0.0078	IPR002867
SMART	SM00647	ibrneu5	186	252	6.9E-17	IPR002867
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	239	253	9.71865	IPR001878
ProSiteProfiles	PS51873	TRIAD supradomain profile.	111	325	43.029488	IPR044066
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	115	163	8.668251	IPR001841

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K11968 (ariadne-1 [EC:2.3.2.31])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G31510.1	IBR domain-containing protein.
RefSeq	XP_017215025.1	PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Daucus carota subsp. sativus]
Swiss-Prot	Q84RR0	Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1
TrEMBL	A0A164UUE6	RBR-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023262 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	19.614502	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.124633	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.7158	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.013583	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.690538	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.327182	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	17.413528	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	15.02197	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.559101	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	18.735188	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.67127	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.536257	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.454079	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	18.983461	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.776356	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.631939	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.930765	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.249546	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.755868	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.924814	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	13.563764	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.448153	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.002028	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.872328	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.00968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.840129	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.266244	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.263	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.227584	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.056089		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.387784		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.33963		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	18.459515		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.241802		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	18.294081		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.146729		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.400997		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.828266		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.01427	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.627341	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.315465	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.768237	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.954935	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.165165	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.588015	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.989072	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	28.046738	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.770991	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.140643	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.006302	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10971, jg14653, jg5913
Aizoaceae	Mesembryanthemum crystallinum	8	gene_10143, gene_19392, gene_2222, gene_2904, gene_2905 ... gene_3181, gene_3182, gene_3183
Amaranthaceae	Atriplex hortensis	7	Ah000345, Ah000348, Ah008011, Ah018958, Ah018959, Ah019341 ... Ah022503
Amaranthaceae	Beta vulgaris	3	BVRB_3g054880, BVRB_4g074750, BVRB_5g119640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg15249, Sbi_jg15522, Sbi_jg17415, Sbi_jg56061 ... Sbi_jg62064
Amaranthaceae	Salicornia europaea	3	Seu_jg26546, Seu_jg26791, Seu_jg676
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00004951, GOSA_00004952, GOSA_00006296, GOSA_00006584 ... GOSA_00007560
Amaranthaceae	Suaeda glauca	8	Sgl01713, Sgl02044, Sgl02045, Sgl06867, Sgl07198, Sgl07199 ... Sgl24261, Sgl29436
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000003098, gene:ENSEOMG00000004108 ... gene:ENSEOMG00000006541, gene:ENSEOMG00000011635, gene:ENSEOMG00000011688, gene:ENSEOMG00000014193, gene:ENSEOMG00000021251, gene:ENSEOMG00000024753, gene:ENSEOMG00000027283, gene:ENSEOMG00000028844, gene:ENSEOMG00000030735, gene:ENSEOMG00000042603, gene:ENSEOMG00000043076, gene:ENSEOMG00000043537, gene:ENSEOMG00000044964
Amaranthaceae	Chenopodium quinoa	13	CQ.Regalona.r1.3AG0002360, CQ.Regalona.r1.3AG0002370 ... CQ.Regalona.r1.3AG0009570, CQ.Regalona.r1.3BG0002510, CQ.Regalona.r1.3BG0009730, CQ.Regalona.r1.4AG0003030, CQ.Regalona.r1.4BG0003180, CQ.Regalona.r1.5AG0025060, CQ.Regalona.r1.5AG0025070, CQ.Regalona.r1.5BG0026510, CQ.Regalona.r1.5BG0026520, CQ.Regalona.r1.6AG0011570, CQ.Regalona.r1.8AG0012250
Anacardiaceae	Pistacia vera	2	pistato.v30095640, pistato.v30243700
Apiaceae	Apium graveolens	4	Ag1G00025, Ag3G01129, Ag5G00927, Ag7G02495
Arecaceae	Cocos nucifera	3	COCNU_01G015350, COCNU_02G012690, scaffold015887G000050
Arecaceae	Phoenix dactylifera	3	gene-LOC103708603, gene-LOC103716244, gene-LOC103724095
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1335.V1.1, AsparagusV1_01.3623.V1.1 ... AsparagusV1_02.475.V1.1, AsparagusV1_04.1972.V1.1, AsparagusV1_09.588.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G24005, Ftri12G27530, Ftri18G01154, Ftri18G19073 ... Ftri1G00637
Brassicaceae	Arabidopsis thaliana	7	AT1G05880.2, AT1G05890.2, AT1G65430.1, AT2G31510.1 ... AT2G31760.1, AT2G31770.1, AT2G31780.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10007273m.g.v1.0, Thhalv10009394m.g.v1.0 ... Thhalv10015682m.g.v1.0, Thhalv10016456m.g.v1.0, Thhalv10017564m.g.v1.0, Thhalv10018351m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g04710.v2.2, Sp1g04720.v2.2, Sp4g13970.v2.2 ... Sp4g14160.v2.2, Sp5g20190.v2.2, Sp6g31880.v2.2, Sp7g00980.v2.2
Brassicaceae	Brassica nigra	12	BniB01g012370.2N, BniB01g012380.2N, BniB01g012640.2N ... BniB03g001580.2N, BniB05g025870.2N, BniB05g061500.2N, BniB06g020580.2N, BniB06g020820.2N, BniB06g044620.2N, BniB08g005350.2N, BniB08g019560.2N, BniB08g019800.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1429, Ceq06G2261
Casuarinaceae	Casuarina glauca	2	Cgl04G1592, Cgl06G2372
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g02280, gene.Cymno05g02420
Dunaliellaceae	Dunaliella salina	1	Dusal.0235s00013.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g21200
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11998
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1628, evm.TU.LG11.149
Plantaginaceae	Plantago ovata	6	Pov_00021409, Pov_00029535, Pov_00038885, Pov_00039569 ... Pov_00039570, Pov_00039574
Plumbaginaceae	Limonium bicolor	4	Lb3G15885, Lb4G25112, Lb4G25115, Lb7G33509
Poaceae	Echinochloa crus-galli	14	AH01.4387, AH03.1232, AH04.2135, AH04.2137, AH08.2241 ... AH09.1004, AH09.1399, BH04.2225, BH04.2226, BH08.2371, BH09.1584, CH04.2564, CH08.2547, CH09.1704
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0312580, gene-QOZ80_4BG0343750 ... gene-QOZ80_6AG0526260, gene-QOZ80_6BG0480180, gene-QOZ80_8AG0638200, gene-QOZ80_8BG0667720
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0177810.1, HORVU.MOREX.r3.5HG0495770.1 ... HORVU.MOREX.r3.5HG0505350.1.CDS1, HORVU.MOREX.r3.5HG0506120.1.CDS1, HORVU.MOREX.r3.6HG0592780.1, HORVU.MOREX.r3.7HG0686010.1
Poaceae	Lolium multiflorum	6	gene-QYE76_006616, gene-QYE76_007060, gene-QYE76_023529 ... gene-QYE76_030416, gene-QYE76_044840, gene-QYE76_049610
Poaceae	Oryza coarctata	8	Oco02G028150, Oco07G009400, Oco08G009250, Oco15G013690 ... Oco16G012870, Oco17G009270, Oco17G011730, Oco18G011640
Poaceae	Oryza sativa	5	LOC_Os01g37970.1, LOC_Os04g41470.1, LOC_Os08g42740.3 ... LOC_Os09g33876.1, LOC_Os09g38630.1
Poaceae	Paspalum vaginatum	7	gene-BS78_02G271100, gene-BS78_05G235300, gene-BS78_K261000 ... gene-BS78_05G236100, gene-BS78_05G236400, gene-BS78_06G144200, gene-BS78_07G210500
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0105319, Pt_Chr0204522, Pt_Chr0204582, Pt_Chr0307171 ... Pt_Chr0403527, Pt_Chr0700145, Pt_Chr0700326
Poaceae	Sporobolus alterniflorus	13	Chr06G002260, Chr11G013140, Chr14G002760, Chr16G018400 ... Chr17G017540, Chr20G002410, Chr21G001930, Chr23G009920, Chr25G009690, Chr26G009830, Chr29G001070, Chr30G009550, Chr30G013930
Poaceae	Thinopyrum elongatum	5	Tel2E01G607700, Tel5E01G475300, Tel5E01G577600 ... Tel6E01G417600, Tel7E01G466200
Poaceae	Triticum dicoccoides	13	gene_TRIDC2AG050640, gene_TRIDC2BG028800 ... gene_TRIDC2BG053830, gene_TRIDC5AG044580, gene_TRIDC5AG052890, gene_TRIDC5BG048430, gene_TRIDC5BG057020, gene_TRIDC6AG033590, gene_TRIDC6BG039830, gene_TRIDC6BG071330, gene_TRIDC6BG071340, gene_TRIDC7AG034970, gene_TRIDC7BG026060
Poaceae	Triticum aestivum	18	TraesCS2A02G349600.1, TraesCS2B02G368000.2 ... TraesCS2D02G348000.2, TraesCS5A02G298200.1, TraesCS5A02G361400.1.cds1, TraesCS5B02G297300.1, TraesCS5B02G364000.1.cds1, TraesCS5D02G305000.1, TraesCS5D02G370300.1.cds1, TraesCS6A02G216900.1, TraesCS6A02G417200.1.cds1, TraesCS6B02G245900.2, TraesCS6B02G472300.1.cds1, TraesCS6D02G198600.5, TraesCS6D02G402400.1.cds1, TraesCS7A02G267200.4, TraesCS7B02G165100.2, TraesCS7D02G267600.2
Poaceae	Zea mays	6	Zm00001eb037260_P005, Zm00001eb078850_P001 ... Zm00001eb115900_P002, Zm00001eb165360_P001, Zm00001eb198350_P001, Zm00001eb425570_P004
Poaceae	Zoysia japonica	4	nbis-gene-17564, nbis-gene-36952, nbis-gene-42758 ... nbis-gene-5122
Poaceae	Zoysia macrostachya	4	Zma_g19963, Zma_g21515, Zma_g23356, Zma_g24463
Portulacaceae	Portulaca oleracea	5	evm.TU.LG07.1492, evm.TU.LG11.1274, evm.TU.LG11.1591 ... evm.TU.LG18.1616, evm.TU.LG20.259
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g05280
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1513 ... evm.TU.Scaffold_12_RagTag.490, evm.TU.Scaffold_6_RagTag.1076, evm.TU.Scaffold_8_RagTag.1050
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12804, nbisL1-mrna-15579, nbisL1-mrna-24253 ... nbisL1-mrna-8980, nbisL1-mrna-8983
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-16588, nbisL1-mrna-20493, nbisL1-mrna-6027 ... nbisL1-mrna-7428
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15412, nbisL1-mrna-22517, nbisL1-mrna-930
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000018l.140, add.evm.TU.utg000018l.141 ... add.evm.TU.utg000027l.125, evm.TU.utg000010l.460, evm.TU.utg000011l.685
Rhizophoraceae	Kandelia obovata	3	Maker00003239, Maker00007836, Maker00008651
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1172, nbisL1-mrna-13614, nbisL1-mrna-19013
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11388, nbisL1-mrna-11970, nbisL1-mrna-20469 ... nbisL1-mrna-24087, nbisL1-mrna-4169
Salicaceae	Populus euphratica	5	populus_peu06631, populus_peu20515, populus_peu24042 ... populus_peu31934, populus_peu31935
Solanaceae	Lycium barbarum	2	gene-LOC132603247, gene-LOC132615598
Solanaceae	Solanum chilense	2	SOLCI000301500, SOLCI003011700
Solanaceae	Solanum pennellii	2	gene-LOC107004635, gene-LOC107023621
Tamaricaceae	Reaumuria soongarica	3	STRG.10388_chr07_-, STRG.28039_chr04_+, gene_4243
Tamaricaceae	Tamarix chinensis	3	TC02G1580, TC02G3019, TC06G1399
Zosteraceae	Zostera marina	1	Zosma03g21870.v3.1