Basic Information
Locus ID:
Ag7G02491
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription factor S-II (TFIIS), central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 271553343 | 271558859 | - | Ag7G02491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 123,885.65 Da | 48.96 | 65.56 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07744 | SPOC domain | 712 | 857 | 2.3E-20 | IPR012921 |
| Pfam | PF07500 | Transcription factor S-II (TFIIS), central domain | 426 | 509 | 1.7E-29 | IPR003618 |
| SUPERFAMILY | SSF46942 | Elongation factor TFIIS domain 2 | 424 | 496 | 6.15E-27 | IPR036575 |
| Gene3D | G3DSA:1.10.472.30 | - | 389 | 495 | 5.7E-27 | IPR036575 |
| SMART | SM00510 | mid_6 | 402 | 503 | 3.1E-41 | IPR003618 |
| ProSiteProfiles | PS51321 | TFIIS central domain profile. | 408 | 520 | 34.22522 | IPR003618 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1064 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 863 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1080 | 1097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 966 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11430.1 | SPOC domain / Transcription elongation factor S-II protein. | 0 |
| RefSeq | XP_017258027.1 | PREDICTED: uncharacterized protein LOC108227414 [Daucus carota subsp. sativus] | 0 |
| Q92576 | PHD finger protein 3 OS=Homo sapiens OX=9606 GN=PHF3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A161ZPA5 | TFIIS central domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023265 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 44.323952 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.19416 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 43.900082 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 43.361134 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.90443 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 65.129906 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 49.64183 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 80.543182 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.278248 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.212246 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.144539 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.897087 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.215664 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.796593 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.458076 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.229067 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.409845 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.829348 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.484313 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.527274 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.374516 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.288554 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.141446 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.954793 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.902905 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.60611 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.905337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.05967 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.867075 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.795531 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.936452 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.161619 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.137878 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.71914 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.135864 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.882076 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.627073 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.888825 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.210161 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.536951 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.737097 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.754147 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.373922 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 30.968435 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 28.186886 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.336096 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.647495 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.881836 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.830103 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.249823 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36767, jg7848 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17837 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031908 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30298, Sbi_jg43715 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18194 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025554 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl65783, Sgl65798, Sgl70137, Sgl70138 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012943, gene:ENSEOMG00000019755 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001730, CQ.Regalona.r1.2BG0002760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253040 |
| Apiaceae | Apium graveolens | 1 | Ag7G02491 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G016250, COCNU_03G016260 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720849, gene-LOC120111517 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1897.V1.1, AsparagusV1_07.3852.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G12813, Ftri7G21685 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G25640.1, AT3G29639.1, AT5G11430.1, AT5G25520.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000617m.g.v1.0, Thhalv10012648m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g05210.v2.2, Sp6g32170.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g017740.2N, BniB02g050640.2N, BniB02g078040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2263 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2461 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g10750, gene.Cymno06g04570, gene.Cymno07g06100 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0753s00006.v1.0, Dusal.0753s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g35610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-57 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1385 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036163 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08526, Lb2G08538 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2182, AH07.794, BH07.4023, BH07.926, CH06.2211 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0105800, gene-QOZ80_2BG0159190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0547330.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019646, gene-QYE76_034866 |
| Poaceae | Oryza coarctata | 4 | Oco03G005510, Oco04G005590, Oco11G012090, Oco12G012250 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g11780.1, LOC_Os06g39480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G081700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201012, Pt_Chr0400607 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G022590, Chr06G032750, Chr10G017380, Chr11G005140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G133000, Tel7E01G603400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG006540, gene_TRIDC6BG009220 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1B02G476000.1, TraesCS6A02G052900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb205470_P001, Zm00001eb240410_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-33414, nbis-gene-41103, nbis-gene-44021 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12426, Zma_g15176, Zma_g33008, Zma_g33009 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.367, evm.TU.LG26.669 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g18140, gene.Posoc08g10160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.807 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13678 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11901 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9053, nbisL1-mrna-9054 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.132 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003890 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3814 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7910 |
| Salicaceae | Populus euphratica | 3 | populus_peu04837, populus_peu04838, populus_peu12822 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635710 |
| Solanaceae | Solanum chilense | 1 | SOLCI004490700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028502 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17243 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0428 |
| Zosteraceae | Zostera marina | 2 | Zosma04g05010.v3.1, Zosma04g08390.v3.1 |