Basic Information
Locus ID:
Ag7G02483
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 271486001 | 271498386 | + | Ag7G02483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 113,080.59 Da | 50.02 | 78.91 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 763 | 1009 | 8.41151E-131 | - |
| Pfam | PF14381 | Ethylene-responsive protein kinase Le-CTR1 | 155 | 358 | 5.6E-78 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 757 | 1008 | 5.0E-67 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 740 | 1008 | 1.12E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 750 | 834 | 1.1E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 836 | 1020 | 1.5E-62 | - |
| SMART | SM00220 | serkin_6 | 757 | 1012 | 5.4E-58 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 757 | 1013 | 42.308022 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 876 | 888 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 763 | 785 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 831 | 844 | 5.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 980 | 1002 | 5.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 936 | 958 | 5.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 917 | 927 | 5.2E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 870 | 888 | 5.2E-11 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1013 | 1032 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 82 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73660.1 | protein tyrosine kinase family protein. Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. | 0 |
| RefSeq | XP_017228348.1 | PREDICTED: serine/threonine-protein kinase EDR1-like [Daucus carota subsp. sativus] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YAU4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.112057 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.709206 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.10562 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.040768 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.123407 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.436193 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.034555 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.836042 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 53.998589 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 55.727402 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 54.551147 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 49.23241 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.854725 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 38.951527 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.542074 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.510967 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.019369 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.639839 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.15012 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.556841 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.454327 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 32.863811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 34.8316 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.935266 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.583414 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.726379 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.009769 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.13353 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.758018 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.766653 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.94544 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.243347 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.813413 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.878166 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.241379 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.28667 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.846798 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.320757 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.023582 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.983828 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 31.323019 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 46.449818 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.069294 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 43.537094 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 40.349457 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 44.712223 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 44.919445 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.648233 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.110231 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.146881 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13330, jg27008 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19984 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002212 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32008, Sbi_jg57337 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25062 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53992, Sgl59326 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004445, gene:ENSEOMG00000022430 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014000, CQ.Regalona.r1.5BG0014570 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150090, pistato.v30292110 |
| Apiaceae | Apium graveolens | 3 | Ag4G00690, Ag4G00691, Ag7G02483 |
| Arecaceae | Cocos nucifera | 2 | scaffold003768G000020, scaffold003768G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695944 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G12395, Ftri6G13516, Ftri8G18347 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18160.1, AT1G73660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006685m.g.v1.0, Thhalv10018059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g16150.v2.2, Sp5g28840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g052000.2N, BniB04g032620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2843 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2996 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.104 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033264 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G16546, Lb3G16558, Lb3G16559 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.924, AH07.3446, BH06.954, BH07.3276, CH06.1049 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0145410, gene-QOZ80_2BG0200850 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0615510.1, HORVU.MOREX.r3.7HG0666850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028939 |
| Poaceae | Oryza coarctata | 4 | Oco03G021390, Oco04G022010, Oco11G006020, Oco12G006050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g50970.1, LOC_Os06g12590.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G276100, gene-BS78_10G097900 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0203341, Pt_Chr0301178, Pt_Chr0404700, Pt_Chr0404755 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G002430, Chr09G020370, Chr11G019450, Chr13G004530 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G551600, Tel7E01G350500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG046420, gene_TRIDC6BG054100 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G308500.1, TraesCS6B02G337200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb254410_P001, Zm00001eb372210_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51386, nbis-gene-8736 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14410, Zma_g29401, Zma_g31637 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2242, evm.TU.LG14.1415 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.722 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14384 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4291 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12341 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.12 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009016 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-940 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8399 |
| Salicaceae | Populus euphratica | 2 | populus_peu28272, populus_peu29725 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599808, gene-LOC132633248 |
| Solanaceae | Solanum chilense | 2 | SOLCI000422700, SOLCI003030600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014282, gene-LOC107023126 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12648 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16700.v3.1 |