Basic Information
Locus ID:
Ag7G02463
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 271146168 | 271155823 | + | Ag7G02463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 207,206.69 Da | 35.93 | 106.89 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 755 | 814 | 3.4E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1124 | 1163 | 7.4E-8 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 67 | 1.3E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 922 | 1102 | 1.0E-36 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 1706 | 1764 | 1.6E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 362 | 384 | 1.2 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 144 | 203 | 6.8E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1238 | 1297 | 2.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 683 | 742 | 4.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 611 | 670 | 8.1E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 1575 | 1822 | 2.92E-38 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 481 | 818 | 2.51E-62 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1169 | 1492 | 1.41E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 1427 | 1651 | 7.31E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 356 | 3.91E-60 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 360 | 477 | 2.28E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 899 | 1095 | 9.85E-57 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 901 | 996 | 2.4E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 235 | 1.6E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1129 | 1233 | 2.1E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 997 | 1128 | 9.9E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 181 | 1.3E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 236 | 547 | 3.1E-89 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1329 | 1643 | 1.4E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1234 | 1328 | 3.0E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1644 | 1856 | 5.0E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 548 | 856 | 2.7E-91 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 1727 | 1749 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 239 | 271 | 330.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 334 | 361 | 460.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 633 | 655 | 100.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 166 | 195 | 480.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 94 | 117 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1751 | 1777 | 400.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 777 | 809 | 670.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1188 | 1211 | 280.0 | - |
| SMART | SM00369 | LRR_typ_2 | 729 | 753 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 681 | 705 | 0.81 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 118 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 190 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1405 | 1428 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 165 | 53.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 214 | 238 | 8.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1212 | 1232 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 633 | 657 | 7.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 777 | 801 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1333 | 1357 | 49.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 657 | 683 | 370.0 | - |
| SMART | SM00369 | LRR_typ_2 | 481 | 504 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 384 | 408 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1284 | 1308 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 239 | 263 | 53.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 921 | 1149 | 1.0E-17 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 1575 | 1598 | 84.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1502 | 1526 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1236 | 1260 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1727 | 1751 | 7.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 311 | 334 | 6.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1775 | 1799 | 2.1 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 921 | 1191 | 27.439053 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 927 | 949 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1040 | 1052 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47110.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017256066.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Daucus carota subsp. sativus] | 0 |
| Q9SD62 | Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana OX=3702 GN=At3g47110 PE=3 SV=1 | 0 | |
| TrEMBL | A0A164UXS3 | LRRNT_2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023116 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.072507 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.155374 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.171831 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.241212 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.149539 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.243381 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.088649 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.028907 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.363853 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.456582 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.704316 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.178566 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.888303 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.358246 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.356121 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.317339 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.025158 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.304057 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.17909 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.488712 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.408134 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.020315 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.119634 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.213643 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.127461 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.248263 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.017026 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.002758 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.041253 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.267714 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.152 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.067629 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.037713 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.107338 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.317637 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.119282 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.106084 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.222646 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.453934 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.636309 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.012402 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.804661 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.105437 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.163052 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.071136 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology