Basic Information
Locus ID:
Ag7G02421
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ribonuclease E G-like protein, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 269600324 | 269610616 | - | Ag7G02421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 112,914.48 Da | 44.85 | 81.96 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10150 | Ribonuclease E/G family | 579 | 858 | 4.3E-86 | IPR019307 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 372 | 580 | 9.08E-5 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 368 | 576 | 1.0E-11 | - |
| TIGRFAM | TIGR00757 | RNaseEG: ribonuclease, Rne/Rng family | 345 | 890 | 3.6E-105 | IPR004659 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 227 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04270.4 | RNAse E/G-like. Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose. | 0 |
| RefSeq | XP_017258491.1 | PREDICTED: ribonuclease E/G-like protein, chloroplastic isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4IV66 | Ribonuclease E/G-like protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNE PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZSE9 | Ribonuclease E/G-like protein, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023137 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.466359 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.014366 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.550154 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.850478 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.298985 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.574989 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.174052 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.681937 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.630101 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.669592 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.071144 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.046811 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.137052 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.964268 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.841323 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.127644 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.038613 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.100764 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.171669 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.201433 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.135264 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.677217 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.859837 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.262476 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.17432 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.126807 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.123282 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.981355 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.295374 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.482478 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.414199 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.119093 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.555903 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.96526 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.500486 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.530764 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.066139 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.26227 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.921364 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.127847 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.817827 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.468515 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.769326 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.007842 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.096492 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.798238 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.076119 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.589138 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.986083 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.829208 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25127 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13393 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012693 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152480 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg42389, Sbi_jg44971, Sbi_jg44972 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27170 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002305 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31884, Sgl31885, Sgl37162, Sgl37163 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013258, gene:ENSEOMG00000026774 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0008150, CQ.Regalona.r1.6AG0008170 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016860 |
| Apiaceae | Apium graveolens | 1 | Ag7G02421 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702373 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.873.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G08139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G04270.5 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002385m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g23150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g034680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2241 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2331 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17460 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2289 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022399 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27755 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1041, BH08.1080, CH08.1190 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625870, gene-QOZ80_8BG0653860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0692650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031618, gene-QYE76_031619 |
| Poaceae | Oryza coarctata | 1 | Oco16G006050 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g23430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G243900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G012600, Chr17G011940, Chr17G011950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G483500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG029110 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G285800.3, TraesCS7B02G177700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038720_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46595 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23936 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1566, evm.TU.LG26.100 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1649 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31681 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16332 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10870 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.949 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013245 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10481 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15587 |
| Salicaceae | Populus euphratica | 1 | populus_peu26866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621746 |
| Solanaceae | Solanum chilense | 1 | SOLCI002645400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011341 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3079 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2459 |
| Zosteraceae | Zostera marina | 1 | Zosma03g09120.v3.1 |