halophFGD

Basic Information

Locus ID: Ag7G02415

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Lysosomal

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	269565729	269576620	+	Ag7G02415

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.70	112,274.66 Da	34.59	79.86	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10810	GH38N_AMII_LAM_like	35	310	2.098E-173	-
Pfam	PF07748	Glycosyl hydrolases family 38 C-terminal domain	598	812	1.1E-49	IPR011682
Pfam	PF01074	Glycosyl hydrolases family 38 N-terminal domain	36	347	1.6E-89	IPR000602
Pfam	PF09261	Alpha mannosidase middle domain	352	444	3.8E-18	IPR015341
Pfam	PF17677	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	894	999	1.1E-12	IPR041147
SUPERFAMILY	SSF74650	Galactose mutarotase-like	452	1002	4.24E-147	IPR011013
SUPERFAMILY	SSF88688	Families 57/38 glycoside transferase middle domain	351	444	2.65E-26	IPR028995
SUPERFAMILY	SSF88713	Glycoside hydrolase/deacetylase	24	349	6.67E-107	IPR011330
Gene3D	G3DSA:2.60.40.1180	-	463	574	1.2E-26	IPR013780
Gene3D	G3DSA:2.70.98.30	-	595	860	2.6E-100	-
Gene3D	G3DSA:3.20.110.10	Glycoside hydrolase 38, N terminal domain	35	315	3.1E-118	IPR027291
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	316	393	1.2E-29	IPR037094
Gene3D	G3DSA:2.60.40.1360	-	881	1002	3.0E-34	-
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	394	451	1.4E-21	IPR037094
SMART	SM00872	Alpha_mann_mid_2	352	426	1.7E-20	IPR015341

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process) GO:0006013 (mannose metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004559 (alpha-mannosidase activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K01191 (alpha-mannosidase [EC:3.2.1.24])

Pathway:

ko00511 (Other glycan degradation) map00511 (Other glycan degradation)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G66150.2	-
RefSeq	XP_017257760.1	PREDICTED: alpha-mannosidase [Daucus carota subsp. sativus]
Swiss-Prot	C0HJB3	Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1
TrEMBL	A0A5B7BPI0	Alpha-mannosidase OS=Davidia involucrata OX=16924 GN=Din_040311 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	38.591427	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	37.255329	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	23.562372	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.302313	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	28.993086	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.925133	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.644877	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.371191	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	80.688622	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	84.046165	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	87.649948	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	57.966587	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	65.946083	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	57.606327	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	51.899326	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	70.136894	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	47.199757	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	110.733398	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	70.385078	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	109.754379	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	129.282578	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	59.836899	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	68.152885	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	65.962357	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	61.047703	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	78.908936	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	65.954422	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	66.274948	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	78.434364	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.705502		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.921721		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.080943		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.977982		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.808699		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.292437		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.011165		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.893553		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.604651		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	33.716713	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	31.837109	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	18.162992	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.821437	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	29.883011	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.533524	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	25.948256	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.423325	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	36.553051	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	54.43634	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	61.306732	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	67.510956	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13428, jg39595, jg40510
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24972, gene_24973
Amaranthaceae	Atriplex hortensis	2	Ah012639, Ah026844
Amaranthaceae	Beta vulgaris	4	BVRB_6g130460, BVRB_6g151840, BVRB_6g151860, BVRB_6g151880
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg13726, Sbi_jg42440, Sbi_jg42441, Sbi_jg45047 ... Sbi_jg45048, Sbi_jg52190
Amaranthaceae	Salicornia europaea	3	Seu_jg27107, Seu_jg27108, Seu_jg9659
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002256, GOSA_00002259, GOSA_00017535
Amaranthaceae	Suaeda glauca	7	Sgl31833, Sgl31834, Sgl33268, Sgl37111, Sgl37112, Sgl38598 ... Sgl38658
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000675, gene:ENSEOMG00000000906 ... gene:ENSEOMG00000000961, gene:ENSEOMG00000002801, gene:ENSEOMG00000003450, gene:ENSEOMG00000003511, gene:ENSEOMG00000026057, gene:ENSEOMG00000026245, gene:ENSEOMG00000027806
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0008760, CQ.Regalona.r1.6AG0008770 ... CQ.Regalona.r1.6AG0019940, CQ.Regalona.r1.6BG0009560, CQ.Regalona.r1.6BG0009570, CQ.Regalona.r1.6BG0021010
Anacardiaceae	Pistacia vera	3	pistato.v30012530, pistato.v30021330, pistato.v30210160
Apiaceae	Apium graveolens	2	Ag7G01388, Ag7G02415
Arecaceae	Cocos nucifera	4	COCNU_02G015710, COCNU_07G002430, COCNU_07G002440 ... COCNU_15G005680
Arecaceae	Phoenix dactylifera	3	gene-LOC103698444, gene-LOC103706173, gene-LOC103708053
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.1219.V1.1, AsparagusV1_04.2142.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G02175, Ftri18G08656, Ftri18G15101, Ftri1G23261
Brassicaceae	Arabidopsis thaliana	3	AT3G26720.1, AT5G13980.1, AT5G66150.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003575m.g.v1.0, Thhalv10003577m.g.v1.0 ... Thhalv10012546m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g15840.v2.2, Sp2g30540.v2.2, Sp6g30020.v2.2
Brassicaceae	Brassica nigra	3	BniB02g066980.2N, BniB07g044560.2N, BniB08g006640.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1939, Ceq06G0156, Ceq06G0157, Ceq06G0158, Ceq08G0040
Casuarinaceae	Casuarina glauca	4	Cgl01G2105, Cgl06G0172, Cgl06G0173, Cgl08G0041
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g01950
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g22290, gene.Thate01g26240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10889, nbisL1-mrna-2318
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2780, evm.TU.LG05.55
Plantaginaceae	Plantago ovata	3	Pov_00016919, Pov_00033050, Pov_00038726
Plumbaginaceae	Limonium bicolor	6	Lb3G18068, Lb4G22329, Lb4G22330, Lb4G22331, Lb4G22436 ... Lb4G22437
Poaceae	Echinochloa crus-galli	7	AH01.2593, AH01.2594, AH04.1449, BH04.1470, CH01.3114 ... CH01.3117, CH04.1677
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0119610, gene-QOZ80_9AG0687140 ... gene-QOZ80_9BG0713390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0019680.1, HORVU.MOREX.r3.5HG0526940.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003603, gene-QYE76_003653, gene-QYE76_070688
Poaceae	Oryza coarctata	3	Oco19G000670, Oco21G006420, Oco22G007540
Poaceae	Oryza sativa	2	LOC_Os10g05069.1, LOC_Os11g32260.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G260800, gene-BS78_01G260900, gene-BS78_K024300 ... gene-BS78_01G261000, gene-BS78_05G155800, gene-BS78_K147300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103105, Pt_Chr0504909, Pt_Chr0704185, Pt_Chr0704203
Poaceae	Sporobolus alterniflorus	5	Chr07G016910, Chr20G008310, Chr29G007730, Chr31G005910 ... Chr31G005940
Poaceae	Thinopyrum elongatum	2	Tel1E01G171400, Tel5E01G766600
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG012450, gene_TRIDC1BG015320 ... gene_TRIDC1BG015330, gene_TRIDC2AG064390, gene_TRIDC5AG068880, gene_TRIDC5BG074340
Poaceae	Triticum aestivum	8	TraesCS1A02G087500.2, TraesCS1B02G106400.2 ... TraesCS1B02G106500.1, TraesCS1D02G088800.1, TraesCS2A02G451000.1, TraesCS5A02G483300.1, TraesCS5B02G496400.1, TraesCS5D02G496800.2
Poaceae	Zea mays	3	Zm00001eb026300_P001, Zm00001eb026330_P001 ... Zm00001eb113240_P001
Poaceae	Zoysia japonica	2	nbis-gene-42299, nbis-gene-45656
Poaceae	Zoysia macrostachya	2	Zma_g15836, Zma_g18902
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2233, evm.TU.LG03.2234, evm.TU.LG03.2236 ... evm.TU.LG05.332, evm.TU.LG17.1285, evm.TU.LG17.1286, evm.TU.LG17.1288, evm.TU.LG25.979
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g04310, gene.Posoc05g14260
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1193, evm.TU.Scaffold_3_RagTag.85 ... evm.TU.Scaffold_11_RagTag.237, evm.TU.Scaffold_11_RagTag.238
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-12382, nbisL1-mrna-12494, nbisL1-mrna-14182 ... nbisL1-mrna-14183, nbisL1-mrna-237, nbisL1-mrna-243, nbisL1-mrna-246
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-14327, nbisL1-mrna-18667, nbisL1-mrna-3055 ... nbisL1-mrna-3056
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12761, nbisL1-mrna-14326, nbisL1-mrna-14327 ... nbisL1-mrna-5886
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000005l.218, evm.TU.utg000005l.219 ... evm.TU.utg000010l.248, evm.TU.utg000019l.1159
Rhizophoraceae	Kandelia obovata	4	Maker00006815, Maker00008942, Maker00010101, Maker00010260
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-379, nbisL1-mrna-380, nbisL1-mrna-618 ... nbisL1-mrna-6567
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18974, nbisL1-mrna-18975, nbisL1-mrna-2435
Salicaceae	Populus euphratica	6	populus_peu23271, populus_peu27111, populus_peu27112 ... populus_peu30350, populus_peu30953, populus_peu30954
Solanaceae	Lycium barbarum	3	gene-LOC132599619, gene-LOC132625127, gene-LOC132625128
Solanaceae	Solanum chilense	2	SOLCI001430500, SOLCI005536800
Solanaceae	Solanum pennellii	2	gene-LOC107009314, gene-LOC107023054
Tamaricaceae	Reaumuria soongarica	3	gene_13607, gene_16258, gene_2130
Tamaricaceae	Tamarix chinensis	3	TC01G3392, TC03G1178, TC09G0119
Zosteraceae	Zostera marina	2	Zosma01g25650.v3.1, Zosma02g01290.v3.1