Basic Information
Locus ID:
Ag7G02397
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
mTERF
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 269422823 | 269434494 | + | Ag7G02397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 55,374.30 Da | 35.27 | 97.78 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 153 | 262 | 1.9E-11 | IPR003690 |
| Pfam | PF02536 | mTERF | 296 | 395 | 7.5E-16 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 187 | 415 | 4.5E-37 | IPR038538 |
| SMART | SM00733 | mt_12 | 344 | 378 | 620.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 312 | 343 | 0.03 | IPR003690 |
| SMART | SM00733 | mt_12 | 69 | 99 | 570.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 209 | 240 | 200.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 174 | 204 | 0.072 | IPR003690 |
| SMART | SM00733 | mt_12 | 245 | 275 | 4.0 | IPR003690 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 478 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_017234871.1 | PREDICTED: transcription termination factor MTERF15, mitochondrial-like [Daucus carota subsp. sativus] | 0 |
| Q9C6A1 | Transcription termination factor MTERF15, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4S4D8Q4 | Transcription termination factor MTEF18, mitochondrial-like OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_018456 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.265439 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.062986 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.66932 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.21405 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.568958 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.022078 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.881632 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.620417 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.945596 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.700057 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.64535 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.791384 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.281097 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.3935 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.017851 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.697318 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.691978 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.008424 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.523042 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.756168 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.808044 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.824567 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.088531 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.913418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.089773 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.358753 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.039423 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.726559 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.955071 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.282382 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.16369 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.014396 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.23091 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.32052 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.103898 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.655784 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.08919 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.028987 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.970048 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.654605 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.041007 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.264244 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.10112 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.328486 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.238827 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.878647 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.35758 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.021922 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.91657 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.855573 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25689 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19703 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001234 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30976, Sbi_jg58300 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25906 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004771 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl54849 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007037, gene:ENSEOMG00000020666 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0019200, CQ.Regalona.r1.5BG0020480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30145210 |
| Apiaceae | Apium graveolens | 1 | Ag7G02397 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G016050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698269 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1968.V1.1, AsparagusV1_Unassigned.1097.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G17803 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018549m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g052580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1762 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1915 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g11760 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.2267, evm.TU.LG10.521, evm.TU.LG10.527 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3499, BH05.3502, CH05.3649 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0440640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0343060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002216 |
| Poaceae | Oryza coarctata | 2 | Oco23G006670, Oco24G006360 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g30610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G099200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G005650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G130400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG036950, gene_TRIDC4BG012580 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G234300.1.cds1, TraesCS4B02G080900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb136360_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25835 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.77, evm.TU.LG09.1307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g10640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.221 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14210 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19525 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14354 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000005l.101 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16914 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19004 |
| Salicaceae | Populus euphratica | 2 | populus_peu05020, populus_peu05054 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610207 |
| Solanaceae | Solanum chilense | 1 | SOLCI005684500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031295 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14650_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0815 |
| Zosteraceae | Zostera marina | 1 | Zosma03g04810.v3.1 |