halophFGD

Basic Information

Locus ID: Ag7G02359

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: FUT13

Description: Glycosyltransferase family 10 (fucosyltransferase) C-term

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	268634581	268637884	+	Ag7G02359

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.04	46,815.18 Da	48.52	84.02	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00852	Glycosyltransferase family 10 (fucosyltransferase) C-term	229	405	3.2E-30	IPR001503
SUPERFAMILY	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase	106	404	9.73E-65	-
Gene3D	G3DSA:3.40.50.11660	-	184	382	4.8E-43	IPR038577
PIRSF	PIRSF037334	FucT_plant	24	412	3.4E-205	IPR017177

Gene Ontology

Biological Process:

GO:0006486 (protein glycosylation)

Molecular Function:

GO:0008417 (fucosyltransferase activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K14412 (alpha-1,4-fucosyltransferase [EC:2.4.1.65])

Pathway:

ko00513 (Various types of N-glycan biosynthesis) map00513 (Various types of N-glycan biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G71990.1	fucosyltransferase 13. This gene encodes a Lewis-type alpha 1,4-fucosyltransferase
RefSeq	XP_017234664.1	PREDICTED: alpha-(1,4)-fucosyltransferase-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9C8W3	Alpha-(1,4)-fucosyltransferase OS=Arabidopsis thaliana OX=3702 GN=FUT13 PE=2 SV=2
TrEMBL	A0A166G535	Fucosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001074 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.943846	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.44885	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.057592	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.598816	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.309215	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.18895	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.080997	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.656241	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.255697	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.231903	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.374237	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.793724	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.900017	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.236803	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.567846	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.665355	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.397016	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.013572	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.535949	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.425264	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.309832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.065338	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.711145	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.849766	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.397982	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.557674	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.964704	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.271666	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.703011		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.75256		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	19.043253		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.875223		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.537211		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.146157		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.06894		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.45816		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	10.853169		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.675095	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	35.161007	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	29.512331	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.492482	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.485641	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.112455	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.2007	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.961851	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.10692	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.380575	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.86306	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.902933	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg12212
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1554
Amaranthaceae	Atriplex hortensis	1	Ah022677
Amaranthaceae	Beta vulgaris	1	BVRB_1g001180
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg29459, Sbi_jg3705
Amaranthaceae	Salicornia europaea	1	Seu_jg6272
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00000753
Amaranthaceae	Suaeda glauca	9	Sgl03986, Sgl09054, Sgl10716, Sgl13555, Sgl14749, Sgl15148 ... Sgl16071, Sgl18731, Sgl19898
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013464, gene:ENSEOMG00000034351 ... gene:ENSEOMG00000047308
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0004440, CQ.Regalona.r1.2BG0027760
Anacardiaceae	Pistacia vera	2	pistato.v30035850, pistato.v30035990
Apiaceae	Apium graveolens	3	Ag3G01317, Ag5G01743, Ag7G02359
Arecaceae	Cocos nucifera	1	COCNU_15G002310
Arecaceae	Phoenix dactylifera	1	gene-LOC103701280
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.773.V1.1
Asteraceae	Flaveria trinervia	1	Ftri1G23853
Brassicaceae	Arabidopsis thaliana	1	AT1G71990.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10018642m.g.v1.0, Thhalv10027318m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g27060.v2.2
Brassicaceae	Brassica nigra	2	BniB03g049880.2N, BniB06g050260.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G1024
Casuarinaceae	Casuarina glauca	1	Cgl03G1109
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g01500
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g13640
Nitrariaceae	Nitraria sibirica	2	evm.TU.Contig10.12, evm.TU.LG06.1399
Plantaginaceae	Plantago ovata	1	Pov_00037647
Plumbaginaceae	Limonium bicolor	2	Lb2G12206, Lb5G27583
Poaceae	Echinochloa crus-galli	3	AH05.310, BH05.362, CH05.419
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0383120, gene-QOZ80_5BG0430010
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0454660.1
Poaceae	Lolium multiflorum	1	gene-QYE76_007676
Poaceae	Oryza coarctata	4	Oco07G006080, Oco08G006020, Oco23G002800, Oco24G002280
Poaceae	Oryza sativa	2	LOC_Os04g35270.1, LOC_Os12g07290.1
Poaceae	Paspalum vaginatum	1	gene-BS78_08G042300
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0703308
Poaceae	Sporobolus alterniflorus	4	Chr04G023110, Chr06G024830, Chr19G012760, Chr27G003170
Poaceae	Thinopyrum elongatum	1	Tel5E01G224500
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG020640, gene_TRIDC5BG020510
Poaceae	Triticum aestivum	3	TraesCS5A02G121700.1, TraesCS5B02G117200.1 ... TraesCS5D02G130300.1
Poaceae	Zea mays	1	Zm00001eb407990_P001
Poaceae	Zoysia japonica	2	nbis-gene-23139, nbis-gene-25545
Poaceae	Zoysia macrostachya	1	Zma_g24808
Portulacaceae	Portulaca oleracea	1	evm.TU.LG19.1463
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g19740
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_7_RagTag.1361
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-20129, nbisL1-mrna-20170
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2637
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-13319
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000002l.272
Rhizophoraceae	Kandelia obovata	1	Maker00011726
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-9030
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18563
Salicaceae	Populus euphratica	2	populus_peu16622, populus_peu18909
Solanaceae	Lycium barbarum	1	gene-LOC132644173
Solanaceae	Solanum chilense	1	SOLCI006624400
Solanaceae	Solanum pennellii	1	gene-LOC107021151
Tamaricaceae	Reaumuria soongarica	1	gene_15170
Tamaricaceae	Tamarix chinensis	1	TC09G2440
Zosteraceae	Zostera marina	1	Zosma02g04900.v3.1