Basic Information
Locus ID:
Ag7G02345
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phosphopantothenate-cysteine ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 268341650 | 268346697 | + | Ag7G02345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 36,900.09 Da | 48.31 | 85.96 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04127 | DNA / pantothenate metabolism flavoprotein | 165 | 279 | 1.6E-10 | IPR007085 |
| Pfam | PF04127 | DNA / pantothenate metabolism flavoprotein | 54 | 103 | 2.1E-4 | IPR007085 |
| SUPERFAMILY | SSF102645 | CoaB-like | 48 | 317 | 9.29E-69 | IPR035929 |
| Gene3D | G3DSA:3.40.50.10300 | - | 33 | 322 | 7.3E-100 | IPR035929 |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02080.7 | - | 0 |
| RefSeq | XP_017222913.1 | PREDICTED: phosphopantothenate--cysteine ligase 1-like isoform X3 [Daucus carota subsp. sativus] | 0 |
| Q9LZM3 | Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana OX=3702 GN=PPCS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A175YL46 | DFP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.542669 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.571719 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.816332 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.75395 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.073543 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.104204 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.397056 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.52694 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.468168 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.703318 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.244396 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.957396 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.358593 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.880844 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.811411 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.944372 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.892491 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.0287 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.833975 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.750847 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.741713 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.485742 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.298081 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.090651 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.853831 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.171404 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.181623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.48811 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.715191 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.897748 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.987665 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.091619 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.960428 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.853107 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.988153 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.500391 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.582004 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.524938 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.313971 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.534834 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.92525 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.570585 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.456509 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.9114 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.465275 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.553392 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.044683 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.773058 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.645918 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.402002 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22616 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16714 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023744 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4159, Sbi_jg49643 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5609 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001013 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl10559 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000014154, gene:ENSEOMG00000034410 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0010910, CQ.Regalona.r1.1BG0014960 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040410 |
| Apiaceae | Apium graveolens | 2 | Ag6G02463, Ag7G02345 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G014930, scaffold007667G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715234 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.140.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G10313 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G12350.1, AT5G02080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014147m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40350.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g057910.2N, BniB05g031310.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1914 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2088 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05050 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0398s00019.v1.0, Dusal.0398s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g06820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8368 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.990 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021143, Pov_00037336 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05570 |
| Poaceae | Echinochloa crus-galli | 11 | AH01.1010, AH02.1505, AH07.2322, AH08.467, BH02.1579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0190610, gene-QOZ80_8AG0619200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0745690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023158, gene-QYE76_032862 |
| Poaceae | Oryza coarctata | 3 | Oco03G013360, Oco04G012990, Oco15G003200 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g36550.1, LOC_Os08g07880.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G173200, gene-BS78_10G111200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204262, Pt_Chr0402411 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009230, Chr15G010740, Chr20G011910, Chr29G010750 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G399900, Tel7E01G906700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6BG038040, gene_TRIDC7AG073080 |
| Poaceae | Triticum aestivum | 5 | TraesCS6B02G227200.1, TraesCS6D02G188000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb182920_P001, Zm00001eb414730_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18733, nbis-gene-18734, nbis-gene-38977 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16537, Zma_g22556 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1988, evm.TU.LG05.124, evm.TU.LG14.1172 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g14590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.694 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9541 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14903 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18243 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2964 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20354 |
| Salicaceae | Populus euphratica | 2 | populus_peu14670, populus_peu32338 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603921, gene-LOC132627437 |
| Solanaceae | Solanum chilense | 1 | SOLCI005324700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006035, gene-LOC107017006 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11432 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1413 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33190.v3.1 |