Basic Information
Locus ID:
Ag7G02334
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 267912753 | 267916370 | - | Ag7G02334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 101,457.24 Da | 29.91 | 105.97 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 480 | 535 | 5.0E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 661 | 920 | 1.2E-24 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 288 | 308 | 0.15 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 381 | 441 | 1.4E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 371 | 4.9E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 660 | 922 | 1.07E-44 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 272 | 544 | 1.36E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 188 | 1.4E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 262 | 567 | 1.3E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 261 | 7.4E-14 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 730 | 926 | 1.6E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 619 | 729 | 5.2E-9 | - |
| SMART | SM00369 | LRR_typ_2 | 332 | 356 | 78.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 117 | 260.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 428 | 454 | 5.4 | - |
| SMART | SM00369 | LRR_typ_2 | 452 | 475 | 41.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 380 | 406 | 45.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 286 | 304 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 144 | 167 | 450.0 | - |
| SMART | SM00369 | LRR_typ_2 | 428 | 451 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 168 | 191 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 122 | 143 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 287 | 314 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 498 | 521 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 380 | 404 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 522 | 545 | 140.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 650 | 926 | 24.456779 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 498 | 511 | 6.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 289 | 302 | 6.0E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_017228479.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Daucus carota subsp. sativus] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A175YAX5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031907 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.428428 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.442219 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.628034 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.856826 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.592038 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.518974 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.906008 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.979044 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.211786 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.162132 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.036449 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.000617 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.659576 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.954524 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.381647 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 39.870049 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.120941 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 56.232719 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 34.673679 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 126.97998 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 106.338097 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.604095 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.367056 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.670765 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.891735 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.468799 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.926332 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.228888 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.81727 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.309468 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.145847 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.529552 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 44.933891 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 32.353943 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 60.9911 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 39.655453 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 28.502865 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 35.041893 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.616051 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 29.136818 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.582016 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 153.411377 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 145.069839 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.946548 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.838642 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 127.419373 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 42.232769 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.92358 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.794916 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.06024 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12176, jg12184, jg6496, jg6497, jg6499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1539 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022651 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g000900, BVRB_1g000910 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10676, Sgl16007 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000014842, gene:ENSEOMG00000033386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000890, CQ.Regalona.r1.2BG0028100 |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30036320, pistato.v30036330, pistato.v30036350 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G02334 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G011260, COCNU_02G011270, COCNU_15G003240 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701420, gene-LOC103707547, gene-LOC120113031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.652.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G21224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006707m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29610.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g015210.2N, BniB07g015330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1555 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1690, Cgl03G1691 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.1437, evm.TU.LG06.1443, evm.TU.LG06.1445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021811 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12217 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.358, BH05.416, CH05.474, CH05.729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383840, gene-QOZ80_5BG0430670 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0346810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002589 |
| Poaceae | Oryza coarctata | 3 | Oco22G003560, Oco22G003570, Oco23G003130 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g09110.1, LOC_Os11g09130.1, LOC_Os12g08180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G052300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104098, Pt_Chr0703351 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G016750, Chr04G023480, Chr06G025290, Chr19G013010 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G218100, Tel5E01G666800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG034170, gene_TRIDC4BG015650 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G101100.1.cds1, TraesCS4D02G097700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb408490_P001, Zm00001eb408500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25504, nbis-gene-25506, nbis-gene-51111 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17683, Zma_g24840 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1992, evm.TU.LG06.341, evm.TU.LG19.1443 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1302 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18459, nbisL1-mrna-18511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13472 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012031 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18511 |
| Salicaceae | Populus euphratica | 2 | populus_peu16647, populus_peu18940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627123 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002869 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1302 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2340 |