Basic Information
Locus ID:
Ag7G02300
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
inactive receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 264741885 | 264746443 | + | Ag7G02300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 112,436.24 Da | 37.35 | 103.45 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 507 | 523 | 1.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 137 | 194 | 6.5E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 761 | 963 | 3.0E-25 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 238 | 276 | 3.5E-8 | IPR025875 |
| SUPERFAMILY | SSF52047 | RNI-like | 91 | 539 | 8.63E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 760 | 1030 | 1.64E-43 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 201 | 2.3E-33 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 735 | 834 | 7.2E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 839 | 1037 | 7.4E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 205 | 569 | 3.4E-82 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 259 | 283 | 2.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 352 | 375 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 480 | 503 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 504 | 528 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 236 | 258 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 158 | 181 | 81.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 238 | 260 | 7.588744 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 506 | 528 | 7.719656 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 353 | 375 | 7.565642 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 757 | 1037 | 27.071569 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 354 | 367 | 1.0E-4 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 504 | 517 | 1.0E-4 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10020.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017242964.1 | PREDICTED: probable inactive receptor kinase At5g10020 [Daucus carota subsp. sativus] | 0 |
| Q0WR59 | Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana OX=3702 GN=At5g10020 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166G203 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000997 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.047294 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.330514 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.403765 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.933724 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.147253 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.740545 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.826538 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.46443 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.629143 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.855938 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.261196 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.986362 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.51968 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.276814 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.944715 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.60544 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.05183 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.290023 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.015169 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.232715 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.52509 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.897458 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.495811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.99248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.323568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.490855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.001283 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.982612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.378362 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.655506 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.285349 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.715981 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.236339 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.813272 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.065922 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.475681 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.550398 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.420412 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.706458 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.672376 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.955415 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.11168 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.190481 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.467557 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.442723 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.172089 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.987728 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.332289 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.369958 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.647896 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39469 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13329 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026796 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41876, Sbi_jg48251 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27592 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017497 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33307, Sgl38515, Sgl38535, Sgl38552 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003556, gene:ENSEOMG00000003920 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019560, CQ.Regalona.r1.6BG0020640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30173430, pistato.v30198920 |
| Apiaceae | Apium graveolens | 2 | Ag3G01270, Ag7G02300 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G006320 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700901, gene-LOC103721205, gene-LOC103722440 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1730.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G16381 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012534m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g33380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051870.2N, BniB08g004360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1798 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1865 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g09940, gene.Cymno11g06410 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11980, gene.Thate04g06860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.732 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014473 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3773, BH03.4057, CH03.4328 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578170, gene-QOZ80_7BG0609460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0123080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039582 |
| Poaceae | Oryza coarctata | 2 | Oco13G013230, Oco14G014000 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G358300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306390 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001830, Chr24G014710, Chr27G015430, Chr28G012190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G317500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG020080, gene_TRIDC2BG024120 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G159900.2, TraesCS2B02G185800.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109780_P002, Zm00001eb327990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-315, nbis-gene-33015 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5600, Zma_g6899 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.284, evm.TU.LG15.668 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g23730, gene.Posoc04g14500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1632 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16555 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12142 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.987 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007483 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15098 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4445 |
| Salicaceae | Populus euphratica | 2 | populus_peu13844, populus_peu23001 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616161 |
| Solanaceae | Solanum chilense | 1 | SOLCI005390200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018150 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2381 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0997, TC11G0236 |
| Zosteraceae | Zostera marina | 2 | Zosma03g30800.v3.1, Zosma06g04140.v3.1 |