halophFGD

Basic Information

Locus ID: Ag7G02278

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	264147517	264149885	+	Ag7G02278

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.22	46,839.65 Da	46.12	81.69	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	64	201	2.09E-5	IPR011043
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	63	257	4.8E-14	IPR017451

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017251503.1	PREDICTED: F-box protein At5g07610-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A166DCR2	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005935 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.064412	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.111347	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.685953	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.644852	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.262486	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.833615	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.123971	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.589585	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.093056	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.062364	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.159113	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.076026	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.18328		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.128785	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.156184	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.0501	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.126378	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.202828	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.35076	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10115, jg13810, jg14130, jg17275, jg17276, jg17277, jg2439 ... jg17278, jg17279, jg17280, jg17281, jg2440
Aizoaceae	Mesembryanthemum crystallinum	5	gene_14413, gene_14414, gene_14893, gene_1984, gene_9907
Amaranthaceae	Atriplex hortensis	7	Ah004028, Ah004029, Ah004033, Ah004034, Ah030906, Ah033291 ... Ah034746
Amaranthaceae	Beta vulgaris	3	BVRB_2g030420, BVRB_5g104470, BVRB_5g104480
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg16415, Sbi_jg24176, Sbi_jg24177, Sbi_jg27434 ... Sbi_jg33167, Sbi_jg60921, Sbi_jg8016
Amaranthaceae	Salicornia europaea	3	Seu_jg12024, Seu_jg22737, Seu_jg7899
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00008079, GOSA_00010768, GOSA_00010769, GOSA_00016280
Amaranthaceae	Suaeda glauca	12	Sgl25015, Sgl25019, Sgl30158, Sgl30162, Sgl52391, Sgl57680 ... Sgl62316, Sgl67166, Sgl71398, Sgl71418, Sgl74988, Sgl75002
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000005584, gene:ENSEOMG00000007608 ... gene:ENSEOMG00000011579, gene:ENSEOMG00000021310, gene:ENSEOMG00000022676, gene:ENSEOMG00000022696, gene:ENSEOMG00000022977, gene:ENSEOMG00000023299, gene:ENSEOMG00000025511, gene:ENSEOMG00000027470, gene:ENSEOMG00000029931, gene:ENSEOMG00000040402, gene:ENSEOMG00000050055
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1BG0021120, CQ.Regalona.r1.2AG0023060 ... CQ.Regalona.r1.4BG0012550, CQ.Regalona.r1.5AG0004440, CQ.Regalona.r1.5AG0004450, CQ.Regalona.r1.5AG0004470, CQ.Regalona.r1.5AG0004480, CQ.Regalona.r1.5BG0004690, CQ.Regalona.r1.5BG0004840, CQ.Regalona.r1.5BG0004850, CQ.Regalona.r1.5BG0004870, CQ.Regalona.r1.5BG0004890, CQ.Regalona.r1.5BG0004900, CQ.Regalona.r1.7AG0019790, CQ.Regalona.r1.7BG0022350
Anacardiaceae	Pistacia vera	8	pistato.v30187460, pistato.v30187480, pistato.v30187490 ... pistato.v30187500, pistato.v30187510, pistato.v30187520, pistato.v30221940, pistato.v30283730
Apiaceae	Apium graveolens	26	Ag10G00383, Ag11G03062, Ag2G02603, Ag2G02604, Ag2G02605 ... Ag2G02606, Ag2G02607, Ag2G02616, Ag4G02750, Ag4G02751, Ag5G00590, Ag5G00775, Ag5G00776, Ag5G00782, Ag5G00803, Ag5G00826, Ag5G00830, Ag5G00832, Ag5G02495, Ag6G01534, Ag6G01748, Ag7G02278, Ag7G02280, Ag9G00896, Ag9G01084, Ag9G01085
Arecaceae	Cocos nucifera	3	COCNU_08G004160, COCNU_08G004170, contig69541135G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103711934
Asparagaceae	Asparagus officinalis	1	AsparagusV1_10.1771.V1.1
Asteraceae	Flaveria trinervia	7	Ftri18G18467, Ftri18G22214, Ftri18G29897, Ftri3G18437 ... Ftri5G04687, Ftri5G21573, Ftri6G08226
Brassicaceae	Arabidopsis thaliana	1	AT5G07610.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10015553m.g.v1.0
Brassicaceae	Brassica nigra	2	BniB08g003310.2N, BniB08g003330.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G1108
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11405, nbisL1-mrna-11453
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.783
Plantaginaceae	Plantago ovata	41	Pov_00000383, Pov_00002431, Pov_00002432, Pov_00002516 ... Pov_00005603, Pov_00007557, Pov_00007610, Pov_00009964, Pov_00010712, Pov_00010877, Pov_00010883, Pov_00010884, Pov_00010885, Pov_00010888, Pov_00011194, Pov_00011198, Pov_00013082, Pov_00017394, Pov_00022234, Pov_00022335, Pov_00024258, Pov_00024998, Pov_00026511, Pov_00028463, Pov_00030072, Pov_00031800, Pov_00033077, Pov_00034150, Pov_00035309, Pov_00035325, Pov_00035587, Pov_00035590, Pov_00038668, Pov_00039529, Pov_00039530, Pov_00040163, Pov_00040197, Pov_00040578, Pov_00040583, Pov_00040672, Pov_00040673
Plumbaginaceae	Limonium bicolor	2	Lb4G21819, Lb5G27822
Poaceae	Echinochloa crus-galli	3	AH02.1487, CH02.1704, CH02.1706
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0014950, gene-QOZ80_1AG0014960 ... gene-QOZ80_2AG0138150, gene-QOZ80_2BG0193830
Poaceae	Oryza coarctata	3	Oco03G015950, Oco04G016580, Oco04G016590
Poaceae	Oryza sativa	2	LOC_Os02g41910.1, LOC_Os02g41930.1
Poaceae	Paspalum vaginatum	1	gene-BS78_K252200
Poaceae	Sporobolus alterniflorus	5	Chr02G022150, Chr02G022170, Chr03G007470, Chr05G013010 ... Chr05G013020
Poaceae	Zoysia japonica	1	nbis-gene-6525
Poaceae	Zoysia macrostachya	1	Zma_g10238
Portulacaceae	Portulaca oleracea	5	evm.TU.LG10.942, evm.TU.LG15.937, evm.TU.LG16.1338 ... evm.TU.LG17.932, evm.TU.LG20.1350
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_7_RagTag.1687
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12434, nbisL1-mrna-12545, nbisL1-mrna-18536 ... nbisL1-mrna-19834, nbisL1-mrna-9544, nbisL1-mrna-9546
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18621, nbisL1-mrna-6387
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-13611
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000002l.50
Rhizophoraceae	Kandelia obovata	1	Maker00012024
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-17668, nbisL1-mrna-22082
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-12375
Salicaceae	Populus euphratica	13	populus_peu03087, populus_peu04414, populus_peu05785 ... populus_peu08180, populus_peu08201, populus_peu09672, populus_peu13476, populus_peu16134, populus_peu16165, populus_peu19810, populus_peu35236, populus_peu37234, populus_peu37457
Solanaceae	Lycium barbarum	13	gene-LOC132603319, gene-LOC132603322, gene-LOC132609885 ... gene-LOC132619387, gene-LOC132622444, gene-LOC132633056, gene-LOC132639197, gene-LOC132640088, gene-LOC132640090, gene-LOC132640091, gene-LOC132640596, gene-LOC132642121, gene-LOC132642175
Solanaceae	Solanum chilense	3	SOLCI002946500, SOLCI003651200, SOLCI004256900
Solanaceae	Solanum pennellii	6	gene-LOC107012822, gene-LOC107017347, gene-LOC107019311 ... gene-LOC107019763, gene-LOC107020107, gene-LOC107024080
Tamaricaceae	Reaumuria soongarica	3	STRG.12658_chr02_+, STRG.16278_chr06_+, STRG.964_chr01_-
Tamaricaceae	Tamarix chinensis	4	TC01G1522, TC02G3321, TC09G0346, TC10G0811