Basic Information
Locus ID:
Ag7G02226
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
FAS2
Description:
Chromatin assembly factor 1 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 262231690 | 262237167 | - | Ag7G02226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 55,128.78 Da | 44.48 | 81.59 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 364 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 180 | 0.095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 60 | 91 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 103 | 140 | 6.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 40 | 0.015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 365 | 4.12E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 387 | 2.7E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 187 | 2.1E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 3 | 41 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 0.0078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 367 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 92 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 140 | 8.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 60 | 95 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 50 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 101 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 108 | 149 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 108 | 145 | 10.785595 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 127 | 141 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 417 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64630.2 | Transducin/WD40 repeat-like superfamily protein. Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. | 0 |
| RefSeq | XP_017240913.1 | PREDICTED: chromatin assembly factor 1 subunit FAS2 [Daucus carota subsp. sativus] | 0 |
| Q9SXY1 | Chromatin assembly factor 1 subunit FAS2 OS=Arabidopsis thaliana OX=3702 GN=FAS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166G9J6 | Chromatin assembly factor 1 subunit FAS2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001363 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.804399 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.781764 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.767126 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.940452 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.372502 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.826765 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.794158 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.316972 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.339773 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.220182 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.588934 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.963037 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.495388 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.108306 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.101962 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.489548 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.964494 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.187193 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.104435 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.424097 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.894603 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.869543 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.759144 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.329508 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.045765 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.495707 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.768033 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.393673 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.8144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.142241 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.214808 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.299689 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.701387 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.494007 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.265369 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.159307 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.110414 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.45349 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.152344 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.165066 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.07738 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.418364 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.738409 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.188198 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.623677 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.010993 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.130262 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.564105 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.045502 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39648 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17914 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027122 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13410, Sbi_jg52440 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9405 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013412 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33742, Sgl39054 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000850, gene:ENSEOMG00000003717 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022300, CQ.Regalona.r1.6BG0023530 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30110650, pistato.v30200900 |
| Apiaceae | Apium graveolens | 1 | Ag7G02226 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G020910, scaffold007467G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713746, gene-LOC120111428 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.725.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G10713 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64630.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27690.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB06g012820.2N, BniB06g012870.2N, BniB06g012880.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1880 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1953 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21130 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.857 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014264 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27799 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.59, BH08.11, CH08.184 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614840, gene-QOZ80_8BG0642180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706580.1 |
| Poaceae | Oryza coarctata | 2 | Oco15G000360, Oco16G000470 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G009500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402693, Pt_Chr0402695 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr17G000170, Chr20G014050, Chr29G012890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G554600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045320, gene_TRIDC7BG037260 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G323200.1, TraesCS7B02G224100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb260310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51950 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22347 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1783, evm.TU.LG06.591 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g10680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1544 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17629 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17810 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12220 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.938 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007625 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15046 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23664 |
| Salicaceae | Populus euphratica | 1 | populus_peu22792 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615124 |
| Solanaceae | Solanum chilense | 1 | SOLCI002191600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003173 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10310 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0508 |
| Zosteraceae | Zostera marina | 1 | Zosma05g16200.v3.1 |